Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM109990_RS07050 Genome accession   NZ_CP085144
Coordinates   1425953..1426480 (-) Length   175 a.a.
NCBI ID   WP_243262948.1    Uniprot ID   -
Organism   Sulfitobacter dubius strain DSM 109990     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1420953..1431480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM109990_RS07025 (DSM109990_01423) - 1421092..1422075 (-) 984 WP_243262944.1 tyrosine recombinase -
  DSM109990_RS07030 (DSM109990_01424) - 1422072..1423706 (-) 1635 WP_243262945.1 hypothetical protein -
  DSM109990_RS07035 (DSM109990_01425) - 1423724..1423873 (-) 150 WP_167360187.1 hypothetical protein -
  DSM109990_RS07040 (DSM109990_01426) - 1423954..1424550 (+) 597 WP_243262946.1 shikimate kinase -
  DSM109990_RS07045 (DSM109990_01427) aroB 1424543..1425658 (+) 1116 WP_243262947.1 3-dehydroquinate synthase -
  DSM109990_RS07050 (DSM109990_01428) ssb 1425953..1426480 (-) 528 WP_243262948.1 single-stranded DNA-binding protein Machinery gene
  DSM109990_RS07055 (DSM109990_01429) - 1426685..1427296 (+) 612 WP_093926410.1 lytic transglycosylase domain-containing protein -
  DSM109990_RS07060 (DSM109990_01430) - 1427479..1428006 (+) 528 WP_243262949.1 hypothetical protein -
  DSM109990_RS07065 (DSM109990_01431) - 1428101..1430191 (-) 2091 WP_243262950.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17990.52 Da        Isoelectric Point: 4.9838

>NTDB_id=615676 DSM109990_RS07050 WP_243262948.1 1425953..1426480(-) (ssb) [Sulfitobacter dubius strain DSM 109990]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGGYGGGGNDYGSGGGGNDYGGGYDSGPSSSGGG
AGGGGSRDLDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=615676 DSM109990_RS07050 WP_243262948.1 1425953..1426480(-) (ssb) [Sulfitobacter dubius strain DSM 109990]
ATGGCCGGCTCAGTGAACAAAGTGATCCTAATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAAAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAAACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAATTGCAGACCCGCAAATGGCAAGACCAATCCGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
CGGCGGCACGTTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCG
GCAATGACTACGGCAGTGGCGGCGGTGGCAATGACTACGGTGGCGGCTATGACAGCGGCCCGTCCTCCTCGGGCGGTGGG
GCCGGCGGCGGCGGAAGCCGTGACCTTGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.977

100

0.526
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.497
  ssb Neisseria meningitidis MC58

41.899

100

0.429
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.429