Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIN98_RS03005 Genome accession   NZ_CP085096
Coordinates   589942..590421 (-) Length   159 a.a.
NCBI ID   WP_014167545.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 584942..595421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS02980 - 585305..585697 (+) 393 WP_005544975.1 hypothetical protein -
  LIN98_RS02985 comE 585717..587126 (+) 1410 WP_050846294.1 type IV pilus secretin PilQ Machinery gene
  LIN98_RS02990 aroK 587340..587867 (+) 528 WP_005555432.1 shikimate kinase AroK -
  LIN98_RS02995 aroB 587891..588979 (+) 1089 WP_005569125.1 3-dehydroquinate synthase -
  LIN98_RS03000 - 588982..589836 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LIN98_RS03005 ssb 589942..590421 (-) 480 WP_014167545.1 single-stranded DNA-binding protein Machinery gene
  LIN98_RS03010 uvrA 590591..593422 (+) 2832 WP_005543937.1 excinuclease ABC subunit UvrA -
  LIN98_RS03015 - 593494..593866 (+) 373 Protein_582 helix-turn-helix domain-containing protein -
  LIN98_RS03020 - 593863..594669 (+) 807 WP_249847582.1 IS3 family transposase -
  LIN98_RS03025 - 594746..595156 (-) 411 WP_005589530.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17817.63 Da        Isoelectric Point: 5.9482

>NTDB_id=615530 LIN98_RS03005 WP_014167545.1 589942..590421(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 4S]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRAARQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=615530 LIN98_RS03005 WP_014167545.1 589942..590421(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGCTCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522