Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NQZ91_RS10565 Genome accession   NZ_CP102145
Coordinates   2099895..2100539 (-) Length   214 a.a.
NCBI ID   WP_105110447.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094895..2105539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS10540 (NQZ91_10540) - 2095004..2095675 (+) 672 WP_105110452.1 YutD family protein -
  NQZ91_RS10545 (NQZ91_10545) rlmN 2095684..2096796 (+) 1113 WP_105123534.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  NQZ91_RS10550 (NQZ91_10550) - 2096793..2097311 (+) 519 WP_105110450.1 VanZ family protein -
  NQZ91_RS10555 (NQZ91_10555) nadE 2097540..2098364 (-) 825 WP_257117519.1 ammonia-dependent NAD(+) synthetase -
  NQZ91_RS10560 (NQZ91_10560) - 2098376..2099836 (-) 1461 WP_105123537.1 nicotinate phosphoribosyltransferase -
  NQZ91_RS10565 (NQZ91_10565) cclA/cilC 2099895..2100539 (-) 645 WP_105110447.1 A24 family peptidase Machinery gene
  NQZ91_RS10570 (NQZ91_10570) - 2100592..2101410 (-) 819 WP_257117520.1 cation diffusion facilitator family transporter -
  NQZ91_RS10575 (NQZ91_10575) - 2101532..2102050 (+) 519 WP_024419426.1 TetR/AcrR family transcriptional regulator -
  NQZ91_RS10580 (NQZ91_10580) - 2102060..2102602 (+) 543 WP_257117521.1 class I SAM-dependent methyltransferase -
  NQZ91_RS10585 (NQZ91_10585) - 2102640..2104640 (+) 2001 WP_306455680.1 sodium:proton antiporter -
  NQZ91_RS10590 (NQZ91_10590) - 2104698..2105480 (-) 783 WP_257117523.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24158.36 Da        Isoelectric Point: 8.9372

>NTDB_id=615527 NQZ91_RS10565 WP_105110447.1 2099895..2100539(-) (cclA/cilC) [Streptococcus suis strain DNS20]
MKAIILFFLGASIGSFLGLVIDRFPEQSIVAPASHCNACKRRLKAWDLIPIVSQVLTKSKCRYCRAKIPYWYLGLEVLSG
LLVLLCHFQVLSLMEMVLVLGGLVLTIYDIKHQEYPFMVWLVFTLVALILSQLNWLFCGFLVLAFVTEKMSKSIGSGDFL
YLASLSLLFGFTEILWIVQISSLLGLAIFYIFKSRSLPYVPFLFLASILVTIVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=615527 NQZ91_RS10565 WP_105110447.1 2099895..2100539(-) (cclA/cilC) [Streptococcus suis strain DNS20]
ATGAAAGCAATTATCTTATTTTTCCTTGGAGCCTCTATCGGTTCCTTCCTCGGTCTGGTCATCGACCGGTTTCCCGAGCA
ATCTATCGTTGCACCTGCCAGCCACTGCAATGCCTGCAAGCGTAGGCTCAAGGCCTGGGATTTGATTCCCATTGTTTCCC
AAGTCCTGACCAAATCCAAATGCCGCTACTGCAGAGCCAAAATCCCTTATTGGTATCTGGGACTGGAAGTCTTGTCTGGT
CTCTTGGTCCTGCTCTGCCATTTTCAAGTCCTTTCCCTTATGGAAATGGTGCTGGTCCTTGGCGGCCTGGTCTTGACTAT
TTATGACATCAAACACCAGGAATATCCCTTCATGGTCTGGTTGGTCTTTACCCTTGTAGCCCTAATCTTATCTCAACTCA
ATTGGCTCTTCTGTGGCTTTTTGGTCCTAGCCTTTGTGACAGAAAAAATGTCCAAGTCTATCGGCTCAGGCGACTTCCTC
TATCTAGCCAGCCTATCCCTGCTTTTTGGCTTTACCGAAATTCTCTGGATTGTCCAAATCAGCTCCCTCCTGGGTCTGGC
TATCTTCTACATCTTTAAATCTCGGTCCCTGCCCTATGTCCCCTTCCTCTTTTTGGCCAGTATTTTGGTGACTATTGTTC
TTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

46.919

98.598

0.463
  cclA/cilC Streptococcus pneumoniae TIGR4

46.829

95.794

0.449
  cclA/cilC Streptococcus pneumoniae Rx1

46.341

95.794

0.444
  cclA/cilC Streptococcus pneumoniae D39

46.341

95.794

0.444
  cclA/cilC Streptococcus pneumoniae R6

46.341

95.794

0.444
  cclA/cilC Streptococcus mitis NCTC 12261

44.55

98.598

0.439