Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ91_RS09895 Genome accession   NZ_CP102145
Coordinates   1975101..1975766 (+) Length   221 a.a.
NCBI ID   WP_257117463.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970101..1980766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS09870 (NQZ91_09870) - 1970241..1970612 (+) 372 WP_105111233.1 S1 RNA-binding domain-containing protein -
  NQZ91_RS09875 (NQZ91_09875) - 1970712..1972057 (+) 1346 WP_257117461.1 IS3 family transposase -
  NQZ91_RS09880 (NQZ91_09880) cysK 1972110..1973036 (-) 927 WP_105111234.1 cysteine synthase A -
  NQZ91_RS09885 (NQZ91_09885) - 1973127..1973759 (-) 633 WP_170238725.1 YigZ family protein -
  NQZ91_RS09890 (NQZ91_09890) comFA/cflA 1973816..1975108 (+) 1293 WP_172094579.1 DEAD/DEAH box helicase Machinery gene
  NQZ91_RS09895 (NQZ91_09895) comFC/cflB 1975101..1975766 (+) 666 WP_257117463.1 ComF family protein Machinery gene
  NQZ91_RS09900 (NQZ91_09900) hpf 1975843..1976385 (+) 543 WP_105111237.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQZ91_RS09905 (NQZ91_09905) - 1976605..1976931 (+) 327 WP_125265373.1 hypothetical protein -
  NQZ91_RS09910 (NQZ91_09910) - 1977047..1980130 (+) 3084 WP_257117464.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25172.76 Da        Isoelectric Point: 6.8188

>NTDB_id=615519 NQZ91_RS09895 WP_257117463.1 1975101..1975766(+) (comFC/cflB) [Streptococcus suis strain DNS20]
MSNCLLCAESLRTRTTFSSILFFQQEKLGICSSCQASFKEIAELHCPSCYKSGTSDICSDCRHWQARGKHIDHRAIFQYN
PAMADYFSKYKFQGDYLLRQIFSQQIKAALSAYSDYTLVPIPLSPERLEERGFNQVTGLLDAAGLPYKELLGKIDSRKQS
SKSREERLDAEQVFYLLEEDELPEKIILVDDIYTTGATIQLAVGLFMKTGQKEIKTFSLSR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=615519 NQZ91_RS09895 WP_257117463.1 1975101..1975766(+) (comFC/cflB) [Streptococcus suis strain DNS20]
ATGTCTAACTGCCTACTCTGTGCGGAAAGCCTGCGAACCCGCACCACATTTAGCTCTATCCTCTTTTTCCAGCAGGAGAA
GCTAGGGATTTGTTCCAGCTGTCAGGCTTCTTTTAAGGAAATAGCAGAGCTCCACTGTCCGTCGTGTTATAAGTCAGGAA
CTTCCGATATCTGCAGTGATTGTCGGCACTGGCAGGCCAGGGGCAAACACATTGACCACAGGGCCATTTTCCAATACAAT
CCAGCCATGGCAGATTATTTCAGCAAGTACAAGTTTCAAGGGGACTATCTGCTCAGACAGATCTTTTCCCAGCAAATCAA
GGCAGCCCTGTCAGCTTATTCGGACTATACCTTGGTTCCCATTCCCCTTAGTCCAGAGAGGTTGGAGGAGCGAGGCTTCA
ATCAGGTGACGGGGCTACTTGATGCGGCTGGTCTTCCATATAAAGAGCTCTTAGGCAAAATTGATAGCCGGAAACAGTCT
TCAAAAAGTCGGGAGGAGCGTCTTGATGCGGAACAGGTCTTTTATTTGTTGGAGGAAGATGAGCTTCCAGAAAAAATAAT
TTTAGTTGACGATATTTACACAACAGGTGCCACAATCCAGCTTGCCGTGGGACTTTTCATGAAAACTGGTCAGAAAGAAA
TCAAAACATTTTCACTTTCACGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae Rx1

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae D39

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae R6

48.165

98.643

0.475
  comFC/cflB Streptococcus mitis NCTC 12261

48.165

98.643

0.475
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471