Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LIN98_RS00470 Genome accession   NZ_CP085096
Coordinates   96455..96907 (+) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91455..101907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS00455 pnp 92412..94541 (-) 2130 WP_032997542.1 polyribonucleotide nucleotidyltransferase -
  LIN98_RS00460 nanQ 94835..95305 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  LIN98_RS00465 ampD 95779..96333 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LIN98_RS00470 pilA 96455..96907 (+) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LIN98_RS00475 - 96934..98341 (+) 1408 Protein_93 GspE/PulE family protein -
  LIN98_RS00480 pilC 98334..99557 (+) 1224 WP_148326171.1 type II secretion system F family protein Machinery gene
  LIN98_RS00485 - 99554..100243 (+) 690 WP_005547547.1 A24 family peptidase -
  LIN98_RS00490 coaE 100293..100916 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  LIN98_RS00495 yacG 100906..101118 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  LIN98_RS00500 - 101118..101390 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=615518 LIN98_RS00470 WP_005586498.1 96455..96907(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 4S]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=615518 LIN98_RS00470 WP_005586498.1 96455..96907(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513