Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   NQZ91_RS09890 Genome accession   NZ_CP102145
Coordinates   1973816..1975108 (+) Length   430 a.a.
NCBI ID   WP_172094579.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1968816..1980108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS09865 (NQZ91_09865) - 1968839..1970239 (+) 1401 WP_172059483.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NQZ91_RS09870 (NQZ91_09870) - 1970241..1970612 (+) 372 WP_105111233.1 S1 RNA-binding domain-containing protein -
  NQZ91_RS09875 (NQZ91_09875) - 1970712..1972057 (+) 1346 WP_257117461.1 IS3 family transposase -
  NQZ91_RS09880 (NQZ91_09880) cysK 1972110..1973036 (-) 927 WP_105111234.1 cysteine synthase A -
  NQZ91_RS09885 (NQZ91_09885) - 1973127..1973759 (-) 633 WP_170238725.1 YigZ family protein -
  NQZ91_RS09890 (NQZ91_09890) comFA/cflA 1973816..1975108 (+) 1293 WP_172094579.1 DEAD/DEAH box helicase Machinery gene
  NQZ91_RS09895 (NQZ91_09895) comFC/cflB 1975101..1975766 (+) 666 WP_257117463.1 ComF family protein Machinery gene
  NQZ91_RS09900 (NQZ91_09900) hpf 1975843..1976385 (+) 543 WP_105111237.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQZ91_RS09905 (NQZ91_09905) - 1976605..1976931 (+) 327 WP_125265373.1 hypothetical protein -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48905.27 Da        Isoelectric Point: 8.0831

>NTDB_id=615518 NQZ91_RS09890 WP_172094579.1 1973816..1975108(+) (comFA/cflA) [Streptococcus suis strain DNS20]
MKELENYYGRLFTKYQLTAEERQAAQTLPSMTEGGACFRCSTAFSDRHRLPNGAYYCRECILLGRVRSDEELYYFPQQDF
PENACLKWSGQLTDWQQKISNGLCANIEKRRPTLVHAVTGAGKTEMIYHAVAQVIDQGGAVCLASPRIDVCIELYKRLQQ
DFAVPISLLHGQSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPMLYRAVDNAVKADGLQVFLTATSTDEL
DRKVKSGQLERLSLPRRFHGNPLIVPEKVWFSQFDQSLKKDKLVVKLKKAIRNQRKTSFPLLIFLPEISKGQEFVAILER
EFPDEKIGFVSSQTENRLEIVQGFRDRTITILVSTTILERGVTFPMVDVMVVQANHYLYTSSSLVQIGGRVGRSMDRPTG
LLLFFHEGSTRAIEKAIAEIKFMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=615518 NQZ91_RS09890 WP_172094579.1 1973816..1975108(+) (comFA/cflA) [Streptococcus suis strain DNS20]
ATGAAAGAATTAGAAAATTATTATGGACGACTGTTTACCAAGTATCAATTGACAGCTGAAGAGCGCCAAGCAGCTCAGAC
CTTACCTAGCATGACAGAGGGGGGCGCTTGTTTTCGTTGTTCGACTGCATTTTCGGACCGCCATCGTTTACCAAACGGGG
CCTACTATTGCCGAGAATGTATCCTGCTAGGCAGGGTGCGGTCAGATGAGGAACTCTATTATTTTCCCCAGCAGGATTTC
CCAGAAAATGCCTGTCTCAAGTGGTCTGGTCAGCTGACTGATTGGCAGCAGAAGATTTCAAACGGGCTCTGTGCCAATAT
TGAAAAAAGGCGGCCGACCTTGGTTCATGCCGTGACGGGGGCTGGAAAGACGGAGATGATTTACCATGCAGTAGCGCAAG
TCATTGACCAGGGCGGAGCAGTTTGTCTGGCCAGTCCCAGAATTGATGTCTGTATCGAGCTTTATAAGCGGCTGCAACAA
GATTTCGCTGTTCCCATCAGTCTCCTTCATGGTCAGTCGGATCCTTATTTTCGGACGCCGCTTGTGGTCGCTACCACCCA
CCAGTTGCTCAAGTTCTACCAGGCCTTTGATTTGGTCTTAATCGATGAGGTGGATGCCTTTCCCTATGCGGACAATCCCA
TGCTCTACCGGGCAGTAGACAATGCCGTCAAAGCAGACGGGCTCCAGGTTTTCCTGACAGCGACCTCGACGGATGAGCTG
GATAGGAAGGTAAAATCCGGCCAATTAGAACGGCTCAGTTTGCCCAGACGCTTTCACGGCAATCCCTTGATTGTGCCAGA
AAAGGTCTGGTTCAGCCAATTTGACCAGAGCCTGAAAAAGGACAAGCTGGTTGTCAAGCTCAAGAAAGCTATCAGAAACC
AGCGAAAAACAAGTTTTCCCTTGCTGATTTTTCTGCCAGAAATTTCCAAAGGCCAGGAATTTGTAGCGATTTTGGAGCGA
GAATTTCCTGATGAGAAAATCGGTTTTGTTTCTAGTCAGACGGAAAATCGACTGGAGATTGTTCAAGGTTTTCGCGACCG
CACCATTACCATCCTGGTTTCAACAACGATTCTGGAGCGAGGTGTGACCTTTCCCATGGTTGATGTCATGGTAGTCCAGG
CCAACCACTATCTCTATACGTCGTCCAGTTTGGTGCAGATTGGAGGTCGAGTCGGACGGTCCATGGATCGTCCCACAGGC
TTGCTCCTCTTTTTTCATGAGGGTTCGACCCGTGCCATTGAAAAAGCAATCGCTGAAATCAAATTTATGAATAAGGAGGC
CGGCTATGTCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(91-235)

Helicase conserved C-terminal domain (Helicase_C)

(293-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

68.677

100

0.688
  comFA/cflA Streptococcus mitis NCTC 12261

68.445

100

0.686
  comFA/cflA Streptococcus pneumoniae D39

67.517

100

0.677
  comFA/cflA Streptococcus pneumoniae R6

67.517

100

0.677
  comFA/cflA Streptococcus pneumoniae TIGR4

67.517

100

0.677
  comFA/cflA Streptococcus pneumoniae Rx1

67.517

100

0.677
  comFA Lactococcus lactis subsp. cremoris KW2

52.792

91.628

0.484
  comFA Latilactobacillus sakei subsp. sakei 23K

38.605

100

0.386