Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIN97_RS05460 Genome accession   NZ_CP085095
Coordinates   1043678..1044169 (-) Length   163 a.a.
NCBI ID   WP_148325676.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1032808..1045810 1043678..1044169 within 0


Gene organization within MGE regions


Location: 1032808..1045810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN97_RS05385 - 1032808..1033392 (-) 585 WP_233115308.1 hypothetical protein -
  LIN97_RS05390 radC 1033493..1033963 (-) 471 WP_233115307.1 DNA repair protein RadC -
  LIN97_RS05395 - 1034079..1034726 (-) 648 WP_148321976.1 DUF3560 domain-containing protein -
  LIN97_RS05400 - 1034829..1035227 (-) 399 WP_233115306.1 hypothetical protein -
  LIN97_RS05405 - 1035325..1035774 (-) 450 WP_148321978.1 STY4534 family ICE replication protein -
  LIN97_RS05410 - 1036088..1036300 (-) 213 WP_061886675.1 hypothetical protein -
  LIN97_RS05415 - 1037093..1039126 (-) 2034 WP_148321980.1 DNA topoisomerase III -
  LIN97_RS05420 - 1039139..1039387 (-) 249 WP_233119023.1 hypothetical protein -
  LIN97_RS05425 - 1039374..1039577 (-) 204 WP_012771584.1 hypothetical protein -
  LIN97_RS05430 - 1039709..1040698 (+) 990 WP_061886671.1 hypothetical protein -
  LIN97_RS05435 - 1040667..1041071 (-) 405 WP_233115305.1 hypothetical protein -
  LIN97_RS05440 - 1041092..1042243 (-) 1152 WP_233115304.1 DNA cytosine methyltransferase -
  LIN97_RS05445 - 1042236..1042727 (-) 492 WP_233115303.1 class I SAM-dependent methyltransferase -
  LIN97_RS05450 - 1042748..1042945 (-) 198 WP_148321982.1 hypothetical protein -
  LIN97_RS05455 - 1043102..1043605 (-) 504 WP_233115302.1 membrane lipoprotein lipid attachment site-containing protein -
  LIN97_RS05460 ssb 1043678..1044169 (-) 492 WP_148325676.1 single-stranded DNA-binding protein Machinery gene
  LIN97_RS05465 - 1044376..1044567 (+) 192 WP_233115301.1 hypothetical protein -
  LIN97_RS05470 - 1044574..1044783 (-) 210 WP_005700756.1 hypothetical protein -
  LIN97_RS05475 - 1045073..1045558 (-) 486 WP_233115300.1 DUF3158 family protein -
  LIN97_RS05480 - 1045595..1045810 (-) 216 WP_233115299.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18194.37 Da        Isoelectric Point: 6.0996

>NTDB_id=615508 LIN97_RS05460 WP_148325676.1 1043678..1044169(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 5R]
MAGVNKVIIVGNLGNEPEMRTMPNGEAVANISVATSEAWVDKNTGERREVTEWHRIVFYRRQAEICGEYLHKGSKVYIEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRPSNSLAQTSGTNTGPKQGDKPVPSQQPMDDFDDDIPFAPIAHGLTKSAV
HIL

Nucleotide


Download         Length: 492 bp        

>NTDB_id=615508 LIN97_RS05460 WP_148325676.1 1043678..1044169(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 5R]
ATGGCTGGAGTAAACAAAGTTATTATCGTTGGTAATCTTGGAAATGAACCGGAAATGAGAACCATGCCAAATGGTGAAGC
CGTAGCCAATATTAGTGTAGCAACTAGCGAAGCTTGGGTTGACAAAAATACCGGGGAACGCCGTGAGGTAACTGAATGGC
ACCGTATTGTATTTTATCGTCGCCAGGCAGAAATATGCGGAGAATACTTACACAAAGGCTCGAAGGTATACATTGAGGGG
CGTTTAAAAACTCGGAAGTGGCAAGACCAGAATGGTCAGGACCGCTATACCACAGAAATCCAAGGTGATGTTTTACAAAT
GCTCGACAGTCGCCCGTCTAATTCATTAGCCCAAACATCCGGAACAAATACCGGACCGAAACAGGGAGACAAACCAGTAC
CATCACAACAGCCGATGGATGATTTTGACGATGACATTCCCTTTGCGCCAATTGCTCATGGGTTAACCAAAAGTGCGGTG
CATATTTTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.444

100

0.712
  ssb Vibrio cholerae strain A1552

51.445

100

0.546
  ssb Neisseria meningitidis MC58

43.353

100

0.46
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.46