Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIN93_RS03120 Genome accession   NZ_CP085091
Coordinates   618435..618914 (-) Length   159 a.a.
NCBI ID   WP_005544986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 613435..623914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS03095 - 613798..614190 (+) 393 WP_005544975.1 hypothetical protein -
  LIN93_RS03100 comE 614210..615619 (+) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  LIN93_RS03105 aroK 615833..616360 (+) 528 WP_005555432.1 shikimate kinase AroK -
  LIN93_RS03110 aroB 616384..617472 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -
  LIN93_RS03115 - 617475..618329 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LIN93_RS03120 ssb 618435..618914 (-) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  LIN93_RS03125 uvrA 619084..621915 (+) 2832 WP_025298238.1 excinuclease ABC subunit UvrA -
  LIN93_RS03130 - 622020..622359 (+) 340 Protein_606 helix-turn-helix domain-containing protein -
  LIN93_RS03135 - 622374..623162 (+) 789 WP_155457584.1 IS3 family transposase -
  LIN93_RS03140 - 623239..623649 (-) 411 WP_005589530.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17861.64 Da        Isoelectric Point: 5.3111

>NTDB_id=615409 LIN93_RS03120 WP_005544986.1 618435..618914(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 30S]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=615409 LIN93_RS03120 WP_005544986.1 618435..618914(-) (ssb) [Aggregatibacter actinomycetemcomitans strain 30S]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522