Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LIN92_RS10095 Genome accession   NZ_CP085089
Coordinates   2067103..2067555 (+) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062103..2072555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN92_RS10080 pnp 2063060..2065189 (-) 2130 WP_032997542.1 polyribonucleotide nucleotidyltransferase -
  LIN92_RS10085 nanQ 2065483..2065953 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  LIN92_RS10090 ampD 2066427..2066981 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LIN92_RS10095 pilA 2067103..2067555 (+) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LIN92_RS10100 - 2067582..2068988 (+) 1407 Protein_1947 GspE/PulE family protein -
  LIN92_RS10105 pilC 2068981..2070204 (+) 1224 WP_005567968.1 type II secretion system F family protein Machinery gene
  LIN92_RS10110 - 2070201..2070890 (+) 690 WP_005547547.1 A24 family peptidase -
  LIN92_RS10115 coaE 2070940..2071563 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  LIN92_RS10120 yacG 2071553..2071765 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  LIN92_RS10125 - 2071765..2072037 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=615368 LIN92_RS10095 WP_005586498.1 2067103..2067555(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 31S]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=615368 LIN92_RS10095 WP_005586498.1 2067103..2067555(+) (pilA) [Aggregatibacter actinomycetemcomitans strain 31S]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513