Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LIO33_RS05320 Genome accession   NZ_CP085088
Coordinates   1068936..1069877 (-) Length   313 a.a.
NCBI ID   WP_012027201.1    Uniprot ID   A0A2K1T0X9
Organism   Streptococcus suis strain Ssuis_MA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063936..1074877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS05295 prsA 1064041..1065042 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  LIO33_RS05300 - 1065103..1065822 (-) 720 WP_009910106.1 O-methyltransferase -
  LIO33_RS05305 - 1065897..1066445 (-) 549 WP_002938103.1 DUF6630 family protein -
  LIO33_RS05310 - 1066461..1066901 (-) 441 WP_012775191.1 hypothetical protein -
  LIO33_RS05315 pepF 1066903..1068705 (-) 1803 WP_172005015.1 oligoendopeptidase F Regulator
  LIO33_RS05320 coiA 1068936..1069877 (-) 942 WP_012027201.1 competence protein CoiA Machinery gene
  LIO33_RS05325 metG 1069941..1071944 (-) 2004 WP_012775442.1 methionine--tRNA ligase -
  LIO33_RS05330 - 1072100..1072693 (+) 594 WP_012027204.1 DUF1361 domain-containing protein -
  LIO33_RS05335 - 1072994..1074031 (+) 1038 WP_012027206.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36261.73 Da        Isoelectric Point: 7.4147

>NTDB_id=615327 LIO33_RS05320 WP_012027201.1 1068936..1069877(-) (coiA) [Streptococcus suis strain Ssuis_MA1]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYRWLVNAEQ
VELEKCLTSIGQVADLFVNNSLALEVQCSGLPISRLQLRTQAYSEAGYQVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=615327 LIO33_RS05320 WP_012027201.1 1068936..1069877(-) (coiA) [Streptococcus suis strain Ssuis_MA1]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACTTGTCCGATACAAATCAGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCGCTCAGCACCTGTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAATGCCGAACAA
GTTGAACTTGAAAAATGCTTGACTAGTATAGGACAGGTCGCTGATTTATTTGTCAATAATAGTCTAGCTTTGGAAGTTCA
ATGTTCCGGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATAGTGAGGCTGGTTATCAGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGGTTT
CACCTCTGGGAATTGGATGATGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTG
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1T0X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.603

99.681

0.514
  coiA Streptococcus pneumoniae Rx1

51.603

99.681

0.514
  coiA Streptococcus pneumoniae D39

51.603

99.681

0.514
  coiA Streptococcus pneumoniae R6

51.603

99.681

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

42.5

100

0.435