Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LIO34_RS06780 Genome accession   NZ_CP085085
Coordinates   1343671..1344612 (-) Length   313 a.a.
NCBI ID   WP_002938107.1    Uniprot ID   A0A142UMZ0
Organism   Streptococcus suis strain Ssuis_MA8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338671..1349612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS06755 prsA 1338775..1339776 (-) 1002 WP_172005870.1 peptidylprolyl isomerase PrsA -
  LIO34_RS06760 - 1339837..1340556 (-) 720 WP_009910106.1 O-methyltransferase -
  LIO34_RS06765 - 1340631..1341179 (-) 549 WP_002938103.1 DUF6630 family protein -
  LIO34_RS06770 - 1341195..1341635 (-) 441 WP_002938105.1 hypothetical protein -
  LIO34_RS06775 pepF 1341637..1343439 (-) 1803 WP_009910108.1 oligoendopeptidase F Regulator
  LIO34_RS06780 coiA 1343671..1344612 (-) 942 WP_002938107.1 competence protein CoiA Machinery gene
  LIO34_RS06785 metG 1344676..1346679 (-) 2004 WP_002938113.1 methionine--tRNA ligase -
  LIO34_RS06790 - 1346833..1347426 (+) 594 WP_002938116.1 DUF1361 domain-containing protein -
  LIO34_RS06795 - 1347727..1348764 (+) 1038 WP_002938119.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36361.92 Da        Isoelectric Point: 7.9421

>NTDB_id=615175 LIO34_RS06780 WP_002938107.1 1343671..1344612(-) (coiA) [Streptococcus suis strain Ssuis_MA8]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTFPLDRDLPRYIAQQLYYRSPNWL
TLQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=615175 LIO34_RS06780 WP_002938107.1 1343671..1344612(-) (coiA) [Streptococcus suis strain Ssuis_MA8]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGGCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTTCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAGATCCCCCAATTGGTTA
ACCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCACATATCCGTCT
ACCCCGCTCTGCTATTGGCTTTGCCCAAATACAAAAAGATTTAACCTTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UMZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425