Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EKM72_RS01650 Genome accession   NZ_AP019305
Coordinates   320848..321450 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain TUM9458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315848..326450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM72_RS01630 yajC 317344..317604 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  EKM72_RS01635 tgt 317623..318762 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  EKM72_RS01640 queA 318785..319810 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EKM72_RS01645 ruvB 319812..320816 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EKM72_RS01650 ruvA 320848..321450 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  EKM72_RS01655 - 321464..321919 (-) 456 WP_000368902.1 ACT domain-containing protein -
  EKM72_RS01660 obgE 321932..323224 (-) 1293 WP_000496100.1 GTPase ObgE -
  EKM72_RS01665 rpmA 323578..323862 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EKM72_RS01670 - 323874..324194 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EKM72_RS01675 rplU 324200..324508 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  EKM72_RS01680 mreD 324744..325274 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  EKM72_RS01685 mreC 325274..326116 (-) 843 WP_042109203.1 rod shape-determining protein MreC -
  EKM72_RS01690 - 326315..326434 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=61514 EKM72_RS01650 WP_000271550.1 320848..321450(-) (ruvA) [Staphylococcus aureus strain TUM9458]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=61514 EKM72_RS01650 WP_000271550.1 320848..321450(-) (ruvA) [Staphylococcus aureus strain TUM9458]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment