Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LF296_RS00975 Genome accession   NZ_CP085083
Coordinates   212865..213440 (+) Length   191 a.a.
NCBI ID   WP_004776192.1    Uniprot ID   N9NEJ8
Organism   Acinetobacter vivianii strain KJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207865..218440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS00955 (LF296_00955) - 208857..209210 (+) 354 WP_272655254.1 DUF1304 domain-containing protein -
  LF296_RS00960 (LF296_00960) tenA 209363..210037 (-) 675 WP_272655255.1 thiaminase II -
  LF296_RS00965 (LF296_00965) - 210211..211293 (+) 1083 WP_272655256.1 DUF475 domain-containing protein -
  LF296_RS00970 (LF296_00970) - 211452..212813 (+) 1362 WP_272655257.1 MFS transporter -
  LF296_RS00975 (LF296_00975) ssb 212865..213440 (+) 576 WP_004776192.1 single-stranded DNA-binding protein Machinery gene
  LF296_RS00980 (LF296_00980) - 213865..215301 (+) 1437 WP_272655258.1 amino acid permease -
  LF296_RS00985 (LF296_00985) - 215365..216864 (-) 1500 WP_272655259.1 PLP-dependent aminotransferase family protein -
  LF296_RS00990 (LF296_00990) gabT 217019..218311 (+) 1293 WP_272655260.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21102.83 Da        Isoelectric Point: 6.4820

>NTDB_id=615098 LF296_RS00975 WP_004776192.1 212865..213440(+) (ssb) [Acinetobacter vivianii strain KJ-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQGEQSGGDFNQPRFNNNNNQGGGYQNTGYNNNNNQNGGFNGGNQGNYA
GSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=615098 LF296_RS00975 WP_004776192.1 212865..213440(+) (ssb) [Acinetobacter vivianii strain KJ-1]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGACGAGATCCAGAAACAAAAACCTTCCCGAACGGGGGTTC
TCTCACTCAATTCTCGATTGCAACGAGTGAGTCGTGGATGGACAAAAGTACGGGTGAACGTAAAGAGCAAACGGAATGGC
ATCGTATCGTGTTGCATAACCGTTTAGGGGAAATTGCTCAACAATATCTACGTAAAGGCTCAAAAGTTTATATCGAAGGT
TCATTGCGTACACGTCAATGGACAGACCAGAATGGTCAGGAACGTTATAGCACTGAAATCCGTGGCGACCAGATGCAAAT
GCTTGATACGCGTCAGCAAGGTGAGCAAAGCGGTGGCGATTTCAACCAACCACGCTTTAACAACAATAATAATCAAGGCG
GCGGCTACCAAAACACGGGTTATAACAATAATAACAACCAGAATGGCGGCTTTAACGGCGGCAACCAAGGTAATTATGCG
GGTAGCCCTCAAGCAGGTAATGGTTTTAATACACCAAAAGCAGCACCTCAACCGGCTGCAGCACCTGCGGACTTAGATGA
CGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NEJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.082

100

0.555
  ssb Vibrio cholerae strain A1552

44.554

100

0.471
  ssb Neisseria meningitidis MC58

39.583

100

0.398
  ssb Neisseria gonorrhoeae MS11

38.86

100

0.393