Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ97_RS09465 Genome accession   NZ_CP102136
Coordinates   1935768..1936433 (-) Length   221 a.a.
NCBI ID   WP_105130092.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930768..1941433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09460 (NQZ97_09460) hpf 1935148..1935690 (-) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQZ97_RS09465 (NQZ97_09465) comFC/cflB 1935768..1936433 (-) 666 WP_105130092.1 ComF family protein Machinery gene
  NQZ97_RS09470 (NQZ97_09470) comFA/cflA 1936426..1937718 (-) 1293 WP_170238431.1 DEAD/DEAH box helicase Machinery gene
  NQZ97_RS09475 (NQZ97_09475) - 1937775..1938407 (+) 633 WP_170238432.1 YigZ family protein -
  NQZ97_RS09480 (NQZ97_09480) cysK 1938497..1939423 (+) 927 WP_002937015.1 cysteine synthase A -
  NQZ97_RS09485 (NQZ97_09485) - 1939450..1939821 (-) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  NQZ97_RS09490 (NQZ97_09490) - 1939823..1941223 (-) 1401 WP_024377222.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25804.66 Da        Isoelectric Point: 8.4541

>NTDB_id=614918 NQZ97_RS09465 WP_105130092.1 1935768..1936433(-) (comFC/cflB) [Streptococcus suis strain M105052_S26]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQHQGKPVVHTALYQYN
QAMARYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=614918 NQZ97_RS09465 WP_105130092.1 1935768..1936433(-) (comFC/cflB) [Streptococcus suis strain M105052_S26]
ATGTCTAATTGTCTATTGTGCGCCCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGCATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACGTTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48