Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG951_RS19720 Genome accession   NZ_CP085037
Coordinates   3797036..3797581 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3792036..3802581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS19695 (LG951_19695) - 3792298..3792906 (-) 609 WP_034620304.1 alpha/beta hydrolase -
  LG951_RS19700 (LG951_19700) - 3792903..3793874 (-) 972 WP_226804545.1 ring-cleaving dioxygenase -
  LG951_RS19705 (LG951_19705) - 3794066..3795583 (-) 1518 WP_226804546.1 ABC transporter permease/substrate-binding protein -
  LG951_RS19710 (LG951_19710) - 3795576..3796541 (-) 966 WP_226804547.1 ABC transporter ATP-binding protein -
  LG951_RS19715 (LG951_19715) rpsR 3796752..3796991 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  LG951_RS19720 (LG951_19720) ssbA 3797036..3797581 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  LG951_RS19725 (LG951_19725) rpsF 3797618..3797905 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  LG951_RS19730 (LG951_19730) ychF 3798014..3799114 (-) 1101 WP_226804548.1 redox-regulated ATPase YchF -
  LG951_RS19735 (LG951_19735) - 3799331..3799537 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  LG951_RS19740 (LG951_19740) - 3799832..3801151 (+) 1320 WP_050944672.1 hydrolase -
  LG951_RS19745 (LG951_19745) - 3801167..3801577 (+) 411 WP_003215287.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=614849 LG951_RS19720 WP_003215157.1 3797036..3797581(-) (ssbA) [Bacillus pumilus strain BIM B-171]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=614849 LG951_RS19720 WP_003215157.1 3797036..3797581(-) (ssbA) [Bacillus pumilus strain BIM B-171]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376