Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LG951_RS17135 Genome accession   NZ_CP085037
Coordinates   3279045..3279734 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain BIM B-171     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274045..3284734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS17100 (LG951_17100) - 3274123..3274605 (-) 483 WP_050944342.1 flagellar protein FlgN -
  LG951_RS17105 (LG951_17105) flgM 3274624..3274887 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  LG951_RS17110 (LG951_17110) - 3274967..3275386 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  LG951_RS17115 (LG951_17115) comFC 3275443..3276129 (-) 687 WP_226804191.1 ComF family protein Machinery gene
  LG951_RS17120 (LG951_17120) - 3276126..3276419 (-) 294 WP_050944343.1 late competence development ComFB family protein -
  LG951_RS17125 (LG951_17125) comFA 3276486..3277613 (-) 1128 WP_226804192.1 DEAD/DEAH box helicase Machinery gene
  LG951_RS17130 (LG951_17130) - 3277985..3278827 (-) 843 WP_226804196.1 DegV family protein -
  LG951_RS17135 (LG951_17135) degU 3279045..3279734 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LG951_RS17140 (LG951_17140) degS 3279799..3280974 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  LG951_RS17145 (LG951_17145) - 3281196..3281864 (+) 669 WP_003212936.1 YigZ family protein -
  LG951_RS17150 (LG951_17150) - 3281849..3282937 (+) 1089 WP_212045589.1 LCP family protein -
  LG951_RS17155 (LG951_17155) - 3282972..3284039 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=614843 LG951_RS17135 WP_008348273.1 3279045..3279734(-) (degU) [Bacillus pumilus strain BIM B-171]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=614843 LG951_RS17135 WP_008348273.1 3279045..3279734(-) (degU) [Bacillus pumilus strain BIM B-171]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996