Detailed information NTG0614841

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: LG951_RS17115
• Genome accession: NZ_CP085037
• Coordinates: 3275443..3276129 (-)
• Length: 228 a.a.
• NCBI ID: WP_226804191.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain BIM B-171
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3270443..3281129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG951_RS17080 (LG951_17080)	fliW	3270576..3271010 (-)	435	WP_044139341.1	flagellar assembly protein FliW	-
LG951_RS17085 (LG951_17085)	-	3271039..3271617 (-)	579	WP_003213106.1	DUF6470 family protein	-
LG951_RS17090 (LG951_17090)	flgL	3271666..3272577 (-)	912	WP_137054345.1	flagellar hook-associated protein FlgL	-
LG951_RS17095 (LG951_17095)	flgK	3272587..3274107 (-)	1521	WP_226804189.1	flagellar hook-associated protein FlgK	-
LG951_RS17100 (LG951_17100)	-	3274123..3274605 (-)	483	WP_050944342.1	flagellar protein FlgN	-
LG951_RS17105 (LG951_17105)	flgM	3274624..3274887 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
LG951_RS17110 (LG951_17110)	-	3274967..3275386 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
LG951_RS17115 (LG951_17115)	comFC	3275443..3276129 (-)	687	WP_226804191.1	ComF family protein	Machinery gene
LG951_RS17120 (LG951_17120)	-	3276126..3276419 (-)	294	WP_050944343.1	late competence development ComFB family protein	-
LG951_RS17125 (LG951_17125)	comFA	3276486..3277613 (-)	1128	WP_226804192.1	DEAD/DEAH box helicase	Machinery gene
LG951_RS17130 (LG951_17130)	-	3277985..3278827 (-)	843	WP_226804196.1	DegV family protein	-
LG951_RS17135 (LG951_17135)	degU	3279045..3279734 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
LG951_RS17140 (LG951_17140)	degS	3279799..3280974 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.50 Da
• Isoelectric Point: 9.6525

>NTDB_id=614841 LG951_RS17115 WP_226804191.1 3275443..3276129(-) (comFC) [Bacillus pumilus strain BIM B-171]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSMWKERPDSTTVLVKNRSVYA
YNDLMKEVLSRFKFRGDTALAELFKQDVRAVFKRSFSMKEPVLIPIPLSKERLKERGFNQSVILASLIGEPILQPLVKIH
QSKQSKKKKNERLDQKGMFQIKQADEIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=614841 LG951_RS17115 WP_226804191.1 3275443..3276129(-) (comFC) [Bacillus pumilus strain BIM B-171]
TTGATCTGCCTCATTTGTGAGGGACATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCCTGCGGGAGAGCACAGTCGAACGATC
AATTATGTCAAGACTGTTCCATGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGAAGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCGAGCAGTATTTAAGCGCTCTTTTTCAATGAAAGAACCTGTCCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTAAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGGCAGATGAAAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (136-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395