Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SCRE_RS07950 Genome accession   NC_022236
Coordinates   1592505..1594481 (-) Length   658 a.a.
NCBI ID   WP_020998026.1    Uniprot ID   U2YC07
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587505..1599481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS07935 (SCRE_1560) amiD 1587545..1588471 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  SCRE_RS07940 (SCRE_1561) amiC 1588471..1589967 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCRE_RS07945 (SCRE_1562) amiA3 1590330..1592309 (-) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  SCRE_RS07950 (SCRE_1563) amiA3 1592505..1594481 (-) 1977 WP_020998026.1 peptide ABC transporter substrate-binding protein Regulator
  SCRE_RS07955 (SCRE_1564) - 1594640..1595329 (-) 690 WP_020998027.1 B3/4 domain-containing protein -
  SCRE_RS07960 (SCRE_1565) - 1595552..1597165 (-) 1614 WP_020998028.1 CTP synthase -
  SCRE_RS07965 (SCRE_1566) rpoE 1597409..1597996 (-) 588 WP_006268227.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72278.79 Da        Isoelectric Point: 8.5876

>NTDB_id=61484 SCRE_RS07950 WP_020998026.1 1592505..1594481(-) (amiA3) [Streptococcus constellatus subsp. pharyngis C232]
MKKSKIIAVAGVALLTAGFLTACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKAKFAKAKEALQAQGVKFPIHLDVPVVETSKNYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGASAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=61484 SCRE_RS07950 WP_020998026.1 1592505..1594481(-) (amiA3) [Streptococcus constellatus subsp. pharyngis C232]
ATGAAAAAAAGTAAAATTATTGCAGTAGCAGGGGTAGCCCTACTAACTGCTGGTTTTTTAACAGCTTGCTCGGGTTCGAA
ATCAAACTCGGCTGAAACAAAATTTGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTACGTAACGTCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAATATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAGGCTC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCAGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAGGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCATACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCTAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAATGGCTTGTACAATCCAACAAAAGCAAAAGCAAAATTTGCAAAAGCAAAAGAAGCTTTGCAAGC
TCAAGGTGTGAAATTCCCAATCCACTTAGACGTTCCTGTTGTAGAAACTTCTAAGAACTACGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTCGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGTTTTGACTCTGGTA
GTGAAAATGCCGGTGCTAAAGCAGTAGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCGCTTGTCTTGCCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATCTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTATTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2YC07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.188

100

0.643
  amiA3 Streptococcus thermophilus LMG 18311

64.036

100

0.641
  amiA Streptococcus salivarius strain HSISS4

63.07

100

0.631

Multiple sequence alignment