Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SCRE_RS07940 Genome accession   NC_022236
Coordinates   1588471..1589967 (-) Length   498 a.a.
NCBI ID   WP_006268182.1    Uniprot ID   F9P7H7
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583471..1594967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS07915 (SCRE_1556) - 1583535..1584500 (+) 966 WP_006268416.1 LacI family DNA-binding transcriptional regulator -
  SCRE_RS07920 (SCRE_1557) - 1584570..1585392 (-) 823 Protein_1565 Cof-type HAD-IIB family hydrolase -
  SCRE_RS07925 (SCRE_1558) amiF 1585535..1586458 (-) 924 WP_020998024.1 ATP-binding cassette domain-containing protein Regulator
  SCRE_RS07930 (SCRE_1559) amiE 1586469..1587536 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCRE_RS07935 (SCRE_1560) amiD 1587545..1588471 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  SCRE_RS07940 (SCRE_1561) amiC 1588471..1589967 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCRE_RS07945 (SCRE_1562) amiA3 1590330..1592309 (-) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  SCRE_RS07950 (SCRE_1563) amiA3 1592505..1594481 (-) 1977 WP_020998026.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55843.07 Da        Isoelectric Point: 10.0448

>NTDB_id=61482 SCRE_RS07940 WP_006268182.1 1588471..1589967(-) (amiC) [Streptococcus constellatus subsp. pharyngis C232]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVRLNLGISYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSALGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=61482 SCRE_RS07940 WP_006268182.1 1588471..1589967(-) (amiC) [Streptococcus constellatus subsp. pharyngis C232]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTCAAGCAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCAGTTTATGAACGCGTTCTTG
GTTTCTATGGCAATTTGATTCAAATTGACCATACAGGTGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAGTATTTATTGTACTTTAATGG
GCAATTTCCGTTTGTTCATCAGAATTTTGTGAGATTAAATCTAGGTATTTCTTATCCAACTTATGCGAATCTTCCTGTTT
TACAAGTTATTTCGCAAGGGCAAGGACAAACGAAAACTTCTGAAGTTCAATTCCCGACAGGTAAGAAAACTTCGTCTGTC
AACATTTATACAAGAACTTATAAATCTCCAAAACAAGCCGATGCGCGTGATGTTGCCAATTATGGAAAAGATGATCCATA
TACGGCAACAGAAAGTAACTACCAATATCCATCAATGATTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTGGCTTTAT
CTTACTTAATTGCTGTTCCGCTTGGATCTTACATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACAGGAGCC
TTGACATTCTTGATGTCATTGCCAACCATCGCTTTGGTTTATATCATTCGGTTGATTGGTTCGGCTCTTGGATTGCCGGA
TTCCTTCCCTATTTTGGGAGCGGGAGATTGGCGTTCCTATGTTCTTCCGGCAGTTATTCTTGGGCTTTTGAGTGCGCCTT
GGACGGCTGTTTGGATTCGTCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCACGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCCATGGTACCACTTGTATCCAGTATACCTGGTGCTATTAT
CGGAGTTATCACAGGTGCGACTTTGACCGAAACAATCTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.321

100

0.803
  amiC Streptococcus thermophilus LMD-9

79.92

100

0.799
  amiC Streptococcus thermophilus LMG 18311

79.719

100

0.797

Multiple sequence alignment