Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG295_RS06615 Genome accession   NZ_CP085024
Coordinates   1381755..1384142 (+) Length   795 a.a.
NCBI ID   WP_107531867.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1376755..1389142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS06595 (LG295_06605) sal 1377000..1378631 (+) 1632 WP_404476763.1 Sal family ABC-F type ribosomal protection protein -
  LG295_RS06600 (LG295_06610) - 1378692..1379837 (+) 1146 WP_318832812.1 cysteine desulfurase family protein -
  LG295_RS06605 (LG295_06615) mnmA 1379838..1380950 (+) 1113 WP_107558289.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG295_RS06610 (LG295_06620) - 1381086..1381751 (+) 666 WP_101049493.1 tetratricopeptide repeat protein -
  LG295_RS06615 (LG295_06625) recD2 1381755..1384142 (+) 2388 WP_107531867.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG295_RS06620 (LG295_06630) alaS 1384491..1387121 (+) 2631 WP_107558288.1 alanine--tRNA ligase -
  LG295_RS06625 (LG295_06635) - 1387190..1387450 (+) 261 WP_017724647.1 IreB family regulatory phosphoprotein -
  LG295_RS06630 (LG295_06640) ruvX 1387454..1387882 (+) 429 WP_017724646.1 Holliday junction resolvase RuvX -
  LG295_RS06635 (LG295_06645) - 1387899..1388225 (+) 327 WP_017724645.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89511.85 Da        Isoelectric Point: 4.4665

>NTDB_id=614690 LG295_RS06615 WP_107531867.1 1381755..1384142(+) (recD2) [Staphylococcus pseudoxylosus strain SLM-183]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTVLEKVPSLPKKKQKQIADQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTHNVLEMTQDMLSQPPSELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTYTNKLKEIE
QSDLLLEIGEIEDRNNVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLQAYFNNDEETESADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=614690 LG295_RS06615 WP_107531867.1 1381755..1384142(+) (recD2) [Staphylococcus pseudoxylosus strain SLM-183]
ATGGAAAACCCTACACTATTTAATAATTCAATGATTAAAGGGACTGTTGATGCGATTTTGTTTCAAAACAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACTTTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCAGAAGGTGACGTTTATACATTTAAAGGCCAAGTCGTTACGCATGCGAAATATGGTAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCCAGTGACCTTTTTAAAGGAATCGGTAA
AAAAACAGCACAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGTGACATATTAAATGATCCAACTGTATTAGAAA
AAGTGCCTAGCTTACCTAAAAAGAAACAAAAACAAATTGCTGATCAAATCGCAAGTAATCAAGAAACAGAACAAATTATT
ATTCGTCTTCATGATTTAGGTTTTGGACCTAAGCTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACGCTCAACGT
AGTTGAAAACAAGCCTTATCAACTTGTATATGACGTCAAAGGTATCGGTTTTAATAAGGCGGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGTTTACTTTATGTGCTAGAAGAAGAATGCATAAAACAAGGC
CATACTTATTTACCAACTCATAATGTACTAGAGATGACTCAAGATATGTTATCACAACCACCAAGTGAATTAATAGAAAC
ACAGCAACTTGAGCAAGTTTTACAAGATCTGGTAAATGACACTAAATTAATCCAGCAAGAAAATGAAGTCGCTATTCCAA
GTCTGTACTATTCAGAACTGAAAAGCGTTCAAAATTTATACCGTAATTTTACTTATACAAATAAACTTAAAGAAATTGAG
CAATCGGATTTACTGCTTGAAATCGGTGAAATTGAGGATCGCAATAATGTTACATATGCAGATTCGCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTGCTGACAGGTGGTCCAGGTACTGGAAAAACTACTGTCATTAAAGGTATTG
TCGAATTGTATGCAGAGTTGCATGGTTTATCATTAGATTATGACGATTATCAAAATGATGATTATCCTGTCGTTCTAGGT
GCGCCAACTGGACGAGCATCAAAACGTTTGTCAGAGTCAACTGGTTTGGAGGCTATGACGATACATCGCCTAATAGGTTG
GAATCAAGATACGCAACCAGAAGATATTTTAGATAATGAAATTTCTGCTAAACTTATCATAATTGATGAAATGTCAATGG
TTGATACATGGTTATTTCATCAATTTTTAAGTGCTGTACCTATCGATGCGCAAGTTATACTAGTCGGGGACGAAGATCAA
CTGCCATCTGTTGGACCAGGTCAAGTATTTAAGGATTTAATTGATTCGAAAGTGATTCCTCGTGTGAATTTAACTGAAGT
TTACCGTCAACAAGATGGTTCAAGTATTATTGAATTAGCGCATAGGATGAAACTAGGTGAAGCCATTGATATTACACAAC
GATTTCATGATCGTAATTTTATAAACTGTACAACTGAACAGATACCTTCTGTTGTTGAAAAAGTAGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATTAAGAAACTAAATAC
AGTATTGCAAGATATCTTGAATCCTAAAGAACAGGATACTCGAGAAATTGAATTTGGTGATATTGTCTTTAGAAAAGGTG
ACAAGGTCTTACAACTTGTTAACCGACCAAGCGATAATATATTTAATGGTGATATTGGCGTTATTGTAGGTATCTTCTGG
GCTAAAGAAAATGCGTTAAATAAAGATGTTTTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGATTT
AATGGAATTAACACACGCTTATTGTACATCAATTCATAAGTCACAAGGTTCAGAATTTCCAATCGTTATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGACCCACAAGCATTTGATATTGGTCTAAAGACGCACGGCCAAGTAAGAATGACACAATTGTGTGCTTTTCTTCAAGC
ATATTTTAATAATGATGAAGAGACTGAAAGTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCTATGATTAATATGGGGGAGTTTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.44

100

0.504