Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SCRE_RS01425 Genome accession   NC_022236
Coordinates   270338..270829 (+) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265338..275829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS01390 (SCRE_0271) - 265873..266712 (+) 840 WP_006269287.1 Cof-type HAD-IIB family hydrolase -
  SCRE_RS09855 (SCRE_0272) - 266724..267330 (+) 607 Protein_258 histidine phosphatase family protein -
  SCRE_RS01405 (SCRE_0273) - 267411..267839 (-) 429 WP_020997594.1 hypothetical protein -
  SCRE_RS01410 (SCRE_0274) - 267814..268719 (-) 906 WP_006269291.1 phosphodiester glycosidase family protein -
  SCRE_RS01415 (SCRE_0275) - 268716..269759 (-) 1044 WP_020997595.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SCRE_RS01420 (SCRE_0276) rpsF 270036..270326 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  SCRE_RS01425 (SCRE_0277) ssb 270338..270829 (+) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  SCRE_RS01430 (SCRE_0278) rpsR 270866..271105 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SCRE_RS01435 (SCRE_0279) - 271279..271956 (-) 678 WP_003070862.1 DUF1129 domain-containing protein -
  SCRE_RS01440 (SCRE_0280) - 271972..272916 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=61443 SCRE_RS01425 WP_003030533.1 270338..270829(+) (ssb) [Streptococcus constellatus subsp. pharyngis C232]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=61443 SCRE_RS01425 WP_003030533.1 270338..270829(+) (ssb) [Streptococcus constellatus subsp. pharyngis C232]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAATTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGACTTTATTAATGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCAGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment