Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAKOR_RS10085 | Genome accession | NC_022226 |
| Coordinates | 2005996..2006466 (-) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus subsp. aureus CN1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1976719..2028927 | 2005996..2006466 | within | 0 |
Gene organization within MGE regions
Location: 1976719..2028927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAKOR_RS09880 (SAKOR_01918) | scn | 1976719..1977059 (-) | 341 | Protein_1872 | complement inhibitor SCIN-A | - |
| SAKOR_RS09885 (SAKOR_01920) | - | 1977743..1978192 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| SAKOR_RS14810 (SAKOR_01921) | - | 1978287..1978622 (-) | 336 | Protein_1874 | SH3 domain-containing protein | - |
| SAKOR_RS09895 (SAKOR_01923) | sak | 1979272..1979763 (-) | 492 | WP_020978269.1 | staphylokinase | - |
| SAKOR_RS09900 (SAKOR_01924) | - | 1979954..1980709 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| SAKOR_RS09905 (SAKOR_01925) | - | 1980721..1980975 (-) | 255 | WP_000611512.1 | phage holin | - |
| SAKOR_RS09910 | - | 1981027..1981134 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| SAKOR_RS14440 (SAKOR_01926) | pepG1 | 1981187..1981321 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| SAKOR_RS09920 (SAKOR_01927) | - | 1981513..1981809 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| SAKOR_RS09925 (SAKOR_01928) | - | 1981867..1982154 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| SAKOR_RS09930 (SAKOR_01929) | - | 1982201..1982353 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| SAKOR_RS09935 (SAKOR_01930) | - | 1982343..1986128 (-) | 3786 | WP_000582165.1 | phage tail spike protein | - |
| SAKOR_RS09940 (SAKOR_01931) | - | 1986144..1987628 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| SAKOR_RS09945 (SAKOR_01932) | - | 1987625..1992154 (-) | 4530 | WP_001796452.1 | phage tail tape measure protein | - |
| SAKOR_RS14975 (SAKOR_01933) | - | 1992211..1992348 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| SAKOR_RS09955 (SAKOR_01934) | - | 1992399..1992749 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| SAKOR_RS14445 (SAKOR_01935) | - | 1992799..1993029 (-) | 231 | Protein_1888 | Ig-like domain-containing protein | - |
| SAKOR_RS09960 (SAKOR_01936) | - | 1993065..1993709 (-) | 645 | WP_000268733.1 | major tail protein | - |
| SAKOR_RS09965 (SAKOR_01937) | - | 1993710..1994117 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| SAKOR_RS09970 (SAKOR_01938) | - | 1994114..1994518 (-) | 405 | WP_000114227.1 | HK97 gp10 family phage protein | - |
| SAKOR_RS09975 (SAKOR_01939) | - | 1994515..1994877 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| SAKOR_RS09980 (SAKOR_01940) | - | 1994861..1995145 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| SAKOR_RS09985 (SAKOR_01941) | - | 1995135..1995418 (-) | 284 | Protein_1894 | hypothetical protein | - |
| SAKOR_RS09990 (SAKOR_01942) | - | 1995438..1996583 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| SAKOR_RS09995 (SAKOR_01943) | - | 1996607..1997344 (-) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| SAKOR_RS10000 (SAKOR_01944) | - | 1997328..1998515 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| SAKOR_RS10005 (SAKOR_01945) | - | 1998531..2000192 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| SAKOR_RS10010 (SAKOR_01946) | - | 2000189..2000533 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| SAKOR_RS10015 (SAKOR_01948) | - | 2000664..2000963 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| SAKOR_RS10020 (SAKOR_01949) | - | 2001195..2001611 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| SAKOR_RS10025 (SAKOR_01950) | - | 2001639..2001839 (-) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| SAKOR_RS10030 (SAKOR_01951) | - | 2001839..2001988 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| SAKOR_RS10035 (SAKOR_01952) | - | 2001985..2002371 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| SAKOR_RS10040 (SAKOR_01953) | - | 2002368..2002574 (-) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| SAKOR_RS10045 (SAKOR_01954) | - | 2002571..2002816 (-) | 246 | WP_001282074.1 | hypothetical protein | - |
| SAKOR_RS10050 (SAKOR_01955) | - | 2002853..2003389 (-) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| SAKOR_RS14980 (SAKOR_01956) | - | 2003382..2003552 (-) | 171 | WP_000714403.1 | hypothetical protein | - |
| SAKOR_RS10055 (SAKOR_01957) | - | 2003539..2003793 (-) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| SAKOR_RS10060 (SAKOR_01958) | - | 2003808..2004050 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| SAKOR_RS10065 (SAKOR_01959) | - | 2004054..2004422 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAKOR_RS10070 (SAKOR_01960) | - | 2004435..2004839 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SAKOR_RS10075 (SAKOR_01961) | - | 2004848..2005066 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| SAKOR_RS10080 (SAKOR_01962) | - | 2005073..2005966 (-) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| SAKOR_RS10085 (SAKOR_01963) | ssbA | 2005996..2006466 (-) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| SAKOR_RS10090 (SAKOR_01964) | - | 2006467..2007084 (-) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| SAKOR_RS10095 (SAKOR_01965) | - | 2007165..2008085 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| SAKOR_RS10100 (SAKOR_01966) | - | 2008087..2010030 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| SAKOR_RS14450 (SAKOR_01967) | - | 2010039..2010302 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| SAKOR_RS10105 (SAKOR_01968) | - | 2010311..2010571 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| SAKOR_RS10110 (SAKOR_01969) | - | 2010576..2010878 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| SAKOR_RS10115 (SAKOR_01970) | - | 2010973..2011134 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| SAKOR_RS10120 (SAKOR_01971) | - | 2011131..2011454 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| SAKOR_RS10125 (SAKOR_01972) | - | 2011509..2011889 (+) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| SAKOR_RS10130 (SAKOR_01973) | - | 2011876..2012073 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| SAKOR_RS10135 (SAKOR_01974) | - | 2012089..2012841 (-) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| SAKOR_RS10140 (SAKOR_01975) | - | 2012892..2013221 (+) | 330 | WP_000128907.1 | hypothetical protein | - |
| SAKOR_RS10145 (SAKOR_01976) | - | 2013210..2013425 (-) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| SAKOR_RS10150 (SAKOR_01977) | - | 2013422..2013703 (-) | 282 | WP_000854074.1 | helix-turn-helix transcriptional regulator | - |
| SAKOR_RS10155 (SAKOR_01978) | - | 2013700..2013873 (-) | 174 | WP_001801500.1 | hypothetical protein | - |
| SAKOR_RS10160 (SAKOR_01979) | - | 2013836..2014549 (+) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| SAKOR_RS10165 (SAKOR_01980) | - | 2014565..2015497 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| SAKOR_RS10170 (SAKOR_01981) | - | 2015503..2015844 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| SAKOR_RS10175 (SAKOR_01982) | - | 2016048..2016230 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| SAKOR_RS10180 (SAKOR_01983) | - | 2016330..2016794 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| SAKOR_RS10185 (SAKOR_01984) | - | 2016853..2017890 (+) | 1038 | WP_000857191.1 | site-specific integrase | - |
| SAKOR_RS10190 (SAKOR_01985) | sph | 2017941..2018771 (+) | 831 | Protein_1937 | sphingomyelin phosphodiesterase | - |
| SAKOR_RS10195 (SAKOR_01986) | lukG | 2019009..2020025 (-) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| SAKOR_RS10200 (SAKOR_01987) | lukH | 2020047..2021099 (-) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| SAKOR_RS10205 (SAKOR_01988) | - | 2021535..2022758 (+) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| SAKOR_RS10210 (SAKOR_01990) | - | 2023130..2023976 (-) | 847 | Protein_1941 | class I SAM-dependent methyltransferase | - |
| SAKOR_RS10215 (SAKOR_01991) | - | 2024038..2024949 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| SAKOR_RS10220 (SAKOR_01992) | - | 2025110..2026417 (+) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| SAKOR_RS10225 (SAKOR_01993) | groL | 2026951..2028567 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| SAKOR_RS10230 (SAKOR_01994) | groES | 2028643..2028927 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=61431 SAKOR_RS10085 WP_000610648.1 2005996..2006466(-) (ssbA) [Staphylococcus aureus subsp. aureus CN1]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=61431 SAKOR_RS10085 WP_000610648.1 2005996..2006466(-) (ssbA) [Staphylococcus aureus subsp. aureus CN1]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |