Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQD67_RS01935 Genome accession   NZ_CP101994
Coordinates   345469..346134 (+) Length   221 a.a.
NCBI ID   WP_000128301.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB3343     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340469..351134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD67_RS01910 (NQD67_01910) - 340487..341155 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  NQD67_RS01915 (NQD67_01915) - 341223..342311 (+) 1089 WP_000862123.1 glycerol dehydrogenase -
  NQD67_RS01920 (NQD67_01920) cysK 342463..343389 (-) 927 WP_000036944.1 cysteine synthase A -
  NQD67_RS01925 (NQD67_01925) - 343480..344124 (-) 645 WP_001108144.1 YigZ family protein -
  NQD67_RS01930 (NQD67_01930) comFA/cflA 344180..345469 (+) 1290 WP_000432954.1 DEAD/DEAH box helicase Machinery gene
  NQD67_RS01935 (NQD67_01935) comFC/cflB 345469..346134 (+) 666 WP_000128301.1 ComF family protein Machinery gene
  NQD67_RS01940 (NQD67_01940) hpf 346211..346765 (+) 555 WP_000599096.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25686.96 Da        Isoelectric Point: 9.5678

>NTDB_id=614271 NQD67_RS01935 WP_000128301.1 345469..346134(+) (comFC/cflB) [Streptococcus agalactiae strain BCJB3343]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDRGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=614271 NQD67_RS01935 WP_000128301.1 345469..346134(+) (comFC/cflB) [Streptococcus agalactiae strain BCJB3343]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATAGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412