Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG291_RS25125 Genome accession   NZ_CP084990
Coordinates   5016328..5016840 (-) Length   170 a.a.
NCBI ID   WP_048010214.1    Uniprot ID   A0AA46P374
Organism   Cytobacillus firmus strain WLG-456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4982927..5016840 5016328..5016840 within 0


Gene organization within MGE regions


Location: 4982927..5016840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS24975 (LG291_24775) yycF 4982927..4983634 (-) 708 WP_048010220.1 response regulator YycF -
  LG291_RS24980 (LG291_24780) - 4983863..4985341 (-) 1479 WP_404356851.1 peptidoglycan DD-metalloendopeptidase family protein -
  LG291_RS25005 (LG291_24805) - 4986982..4988274 (-) 1293 WP_394581531.1 adenylosuccinate synthase -
  LG291_RS25010 (LG291_24810) dnaB 4988667..4990031 (-) 1365 WP_035328281.1 replicative DNA helicase -
  LG291_RS25015 (LG291_24815) rplI 4990210..4990656 (-) 447 WP_035328283.1 50S ribosomal protein L9 -
  LG291_RS25020 (LG291_24820) - 4990653..4992626 (-) 1974 WP_222501666.1 DHH family phosphoesterase -
  LG291_RS25025 (LG291_24825) - 4992658..4993593 (-) 936 WP_048010215.1 YybS family protein -
  LG291_RS25030 (LG291_24830) rpsR 4993796..4994035 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  LG291_RS25035 (LG291_24835) - 4994942..4995673 (+) 732 WP_404356854.1 hypothetical protein -
  LG291_RS25040 (LG291_24840) - 4995745..4995966 (-) 222 WP_404356856.1 hypothetical protein -
  LG291_RS25045 (LG291_24845) - 4996194..4998680 (-) 2487 WP_404356858.1 hypothetical protein -
  LG291_RS25050 (LG291_24850) - 4998736..4999242 (-) 507 WP_404356860.1 hypothetical protein -
  LG291_RS25055 (LG291_24855) - 4999796..5000137 (-) 342 WP_404356862.1 helix-turn-helix domain-containing protein -
  LG291_RS25060 (LG291_24860) - 5000267..5001256 (+) 990 WP_404356864.1 DGQHR domain-containing protein -
  LG291_RS25065 (LG291_24865) - 5001479..5004637 (-) 3159 WP_404356866.1 type I restriction endonuclease subunit R -
  LG291_RS25070 (LG291_24870) - 5004661..5005923 (-) 1263 WP_404356868.1 restriction endonuclease subunit S -
  LG291_RS25075 (LG291_24875) - 5005913..5007505 (-) 1593 WP_404356870.1 type I restriction-modification system subunit M -
  LG291_RS25080 (LG291_24880) - 5007528..5008094 (-) 567 WP_404356872.1 restriction endonuclease subunit S -
  LG291_RS25085 (LG291_24885) - 5008650..5009102 (-) 453 WP_404356874.1 hypothetical protein -
  LG291_RS25090 (LG291_24890) - 5009092..5009715 (-) 624 WP_404356876.1 tyrosine-type recombinase/integrase -
  LG291_RS25095 (LG291_24895) istA 5009921..5011336 (+) 1416 WP_404354654.1 IS21 family transposase -
  LG291_RS25100 (LG291_24900) istB 5011333..5012058 (+) 726 WP_404354655.1 IS21-like element helper ATPase IstB -
  LG291_RS25105 (LG291_24905) - 5012096..5013061 (-) 966 WP_404356878.1 hypothetical protein -
  LG291_RS25110 (LG291_24910) - 5013075..5014496 (-) 1422 WP_404359576.1 tyrosine-type recombinase/integrase -
  LG291_RS25115 (LG291_24915) - 5014489..5015601 (-) 1113 WP_404356880.1 tyrosine-type recombinase/integrase -
  LG291_RS25120 (LG291_24920) rpsR 5015811..5016050 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  LG291_RS25125 (LG291_24925) ssbA 5016328..5016840 (-) 513 WP_048010214.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18860.59 Da        Isoelectric Point: 4.7827

>NTDB_id=614240 LG291_RS25125 WP_048010214.1 5016328..5016840(-) (ssbA) [Cytobacillus firmus strain WLG-456]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=614240 LG291_RS25125 WP_048010214.1 5016328..5016840(-) (ssbA) [Cytobacillus firmus strain WLG-456]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTGCTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAATCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAAAGTGTCCAATTCCTTGAGCCGAAGAA
TAGTTCTGGTGGCCAGGGCGGCGGTAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGCCAGGATAATCGTAATCAGGGCAACTATACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAA
ATCGACATTTCCGATGACGACCTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.787

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371