Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG112_RS02875 Genome accession   NZ_CP084934
Coordinates   612102..612614 (-) Length   170 a.a.
NCBI ID   WP_254302051.1    Uniprot ID   -
Organism   Buchnera aphidicola (Sitobion miscanthi) strain LF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 607102..617614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG112_RS02865 - 608224..609807 (-) 1584 WP_254301764.1 peptide chain release factor 3 -
  LG112_RS02870 - 610864..611442 (-) 579 WP_254301765.1 NfuA family Fe-S biogenesis protein -
  LG112_RS02875 ssb 612102..612614 (-) 513 WP_254302051.1 single-stranded DNA-binding protein Machinery gene
  LG112_RS02880 dnaB 613242..614639 (+) 1398 WP_158338836.1 replicative DNA helicase -
  LG112_RS02885 gshB 614948..615910 (+) 963 WP_254301766.1 glutathione synthase -
  LG112_RS02890 ruvX 615921..616340 (+) 420 WP_254301767.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19309.72 Da        Isoelectric Point: 6.6504

>NTDB_id=614148 LG112_RS02875 WP_254302051.1 612102..612614(-) (ssb) [Buchnera aphidicola (Sitobion miscanthi) strain LF]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIIVNIGGTMQMLGSRNSNVQAMSTHDNSNTVMKSQKIDKVNFDKNIETHKPNKDLIHSS
EIDFDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=614148 LG112_RS02875 WP_254302051.1 612102..612614(-) (ssb) [Buchnera aphidicola (Sitobion miscanthi) strain LF]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTCTTATTGGACATTTAGGACAAGATCCTGAAGTGCGTTACATGCCAAATGG
TAATGCAGTAGTAAATATGACTTTGGCTACTTCAGAAAATTGGAAAGATAAAAATACTGGTGAAAATAAAGAAAAAACAG
AATGGCATCGTATAGTTTTGTTTGGAAAATTAGCAGAAATCGCTGGAGAATATTTAAGAAAAGGTTCTCAAGTATATATT
GAAGGTTCATTGCAAACTAGAAAGTGGCAAGATCAAAATGGACTCGAACGTTATACTACAGAAATAATTGTAAACATTGG
TGGTACTATGCAAATGTTAGGTAGTCGTAATTCTAACGTGCAAGCAATGTCAACGCATGATAATAGTAATACTGTAATGA
AATCACAAAAAATAGACAAAGTAAATTTTGATAAAAATATAGAAACACACAAACCTAACAAAGATTTAATTCATTCTTCA
GAAATAGATTTTGATGATGAGATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.667

100

0.6
  ssb Glaesserella parasuis strain SC1401

47.802

100

0.512
  ssb Neisseria gonorrhoeae MS11

42.614

100

0.441
  ssb Neisseria meningitidis MC58

42.614

100

0.441