Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LHA26_RS02465 Genome accession   NZ_CP084930
Coordinates   507781..508338 (+) Length   185 a.a.
NCBI ID   WP_252167177.1    Uniprot ID   -
Organism   Sphingomonas morindae strain NBD5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 502781..513338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA26_RS02440 (LHA26_02440) ribB 503298..504425 (+) 1128 WP_252167172.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  LHA26_RS02445 (LHA26_02445) ribH 504425..504841 (+) 417 WP_252167173.1 6,7-dimethyl-8-ribityllumazine synthase -
  LHA26_RS02450 (LHA26_02450) - 504903..505577 (+) 675 WP_252167174.1 COQ9 family protein -
  LHA26_RS02455 (LHA26_02455) - 505667..505909 (+) 243 WP_252167175.1 FeoA family protein -
  LHA26_RS02460 (LHA26_02460) - 505906..507768 (+) 1863 WP_252167176.1 ferrous iron transporter B -
  LHA26_RS02465 (LHA26_02465) ssb 507781..508338 (+) 558 WP_252167177.1 single-stranded DNA-binding protein Machinery gene
  LHA26_RS02470 (LHA26_02470) - 508406..509155 (-) 750 WP_252167178.1 dienelactone hydrolase family protein -
  LHA26_RS02475 (LHA26_02475) - 509172..509711 (-) 540 WP_252167179.1 DUF177 domain-containing protein -
  LHA26_RS02480 (LHA26_02480) - 509708..510226 (-) 519 WP_252167180.1 ubiquinol-cytochrome C chaperone family protein -
  LHA26_RS02485 (LHA26_02485) - 510366..510860 (+) 495 WP_252167181.1 outer membrane protein assembly factor BamE -
  LHA26_RS02490 (LHA26_02490) - 510870..512912 (+) 2043 WP_252167182.1 response regulator -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18998.54 Da        Isoelectric Point: 5.0179

>NTDB_id=614137 LHA26_RS02465 WP_252167177.1 507781..508338(+) (ssb) [Sphingomonas morindae strain NBD5]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSESWKDRQSGERREKTEWHSVAIFNEGLANTAERYLRKGSKVYI
EGQLQTRKWQGQDGQDRYSTEIVLQGFNGQMVMLDGPGGGAGGGGGGGGGRDFGGDDEFGGGYGGGGGGGGGFGGGQRGG
GATGASGGNRPSSAFDTDLDDDVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=614137 LHA26_RS02465 WP_252167177.1 507781..508338(+) (ssb) [Sphingomonas morindae strain NBD5]
ATGGCCGGCAGTGTGAACAAGGTGATCCTGGTCGGCAATCTCGGCCGCGATCCCGAATCGCGCAGCTTCCAGAATGGCGG
CAAGGTGGTGAACCTGCGCATCGCCACCTCGGAAAGCTGGAAGGACCGCCAAAGCGGCGAGCGCCGCGAGAAGACCGAGT
GGCACTCGGTCGCCATCTTCAACGAAGGCCTCGCCAACACCGCCGAGCGCTATCTGCGCAAGGGCTCGAAAGTCTATATC
GAGGGCCAGCTTCAGACGCGCAAATGGCAGGGCCAGGACGGCCAGGATCGCTACAGCACCGAAATCGTGCTGCAAGGCTT
CAACGGCCAGATGGTGATGCTGGACGGCCCCGGCGGCGGCGCGGGTGGCGGCGGCGGCGGTGGCGGCGGCCGCGATTTCG
GCGGCGATGACGAGTTCGGCGGCGGCTATGGCGGCGGCGGCGGCGGTGGTGGCGGCTTCGGCGGCGGCCAGCGCGGCGGC
GGCGCCACGGGCGCAAGCGGCGGCAACCGCCCCTCCAGCGCCTTCGACACCGACCTCGACGACGACGTGCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.901

98.378

0.481
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.481
  ssb Neisseria meningitidis MC58

38.462

98.378

0.378
  ssb Neisseria gonorrhoeae MS11

38.462

98.378

0.378