Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   LG653_RS03620 Genome accession   NZ_CP084921
Coordinates   742402..743535 (-) Length   377 a.a.
NCBI ID   WP_005804749.1    Uniprot ID   A0A009MXX9
Organism   Acinetobacter pittii strain CEP14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 737402..748535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS03595 (LG653_03595) yeaM 737574..738338 (-) 765 WP_005804753.1 helix-turn-helix transcriptional regulator -
  LG653_RS03600 (LG653_03600) nepI 738360..739574 (-) 1215 WP_005804752.1 MFS transporter -
  LG653_RS03605 (LG653_03605) - 739710..740363 (+) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -
  LG653_RS03610 (LG653_03610) - 740468..741388 (+) 921 WP_002114137.1 DMT family transporter -
  LG653_RS03615 (LG653_03615) yrdC 741781..742350 (-) 570 WP_005804750.1 Sua5/YciO/YrdC/YwlC family protein -
  LG653_RS03620 (LG653_03620) dprA 742402..743535 (-) 1134 WP_005804749.1 DNA-processing protein DprA Machinery gene
  LG653_RS03625 (LG653_03625) tsaP 743556..744710 (-) 1155 WP_005804748.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LG653_RS03630 (LG653_03630) def 744833..745363 (+) 531 WP_002114101.1 peptide deformylase -
  LG653_RS03635 (LG653_03635) - 745407..745832 (+) 426 WP_005804747.1 DUF2946 family protein -
  LG653_RS03640 (LG653_03640) oprC 745905..748019 (+) 2115 WP_017482415.1 TonB-dependent copper receptor -
  LG653_RS03645 (LG653_03645) - 748073..748279 (+) 207 WP_005804745.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41804.31 Da        Isoelectric Point: 6.5419

>NTDB_id=614077 LG653_RS03620 WP_005804749.1 742402..743535(-) (dprA) [Acinetobacter pittii strain CEP14]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPAQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=614077 LG653_RS03620 WP_005804749.1 742402..743535(-) (dprA) [Acinetobacter pittii strain CEP14]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGTTATCCCGCTCAGTTATTACCTTATACAGATCATCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGG
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTTTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009MXX9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.981

100

0.91

  dprA Acinetobacter baumannii strain A118

90.451

100

0.905

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387