Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NPS16_RS02560 Genome accession   NZ_CP101986
Coordinates   525934..526590 (-) Length   218 a.a.
NCBI ID   WP_168750868.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520934..531590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS02535 (NPS16_02535) trpD 521368..522375 (+) 1008 WP_258969068.1 anthranilate phosphoribosyltransferase -
  NPS16_RS02540 (NPS16_02540) trpC 522368..523135 (+) 768 WP_002266319.1 indole-3-glycerol phosphate synthase TrpC -
  NPS16_RS02545 (NPS16_02545) - 523122..523703 (+) 582 WP_258969069.1 phosphoribosylanthranilate isomerase -
  NPS16_RS02550 (NPS16_02550) trpB 523700..524911 (+) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  NPS16_RS02555 (NPS16_02555) trpA 524915..525697 (+) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  NPS16_RS02560 (NPS16_02560) cclA/cilC 525934..526590 (-) 657 WP_168750868.1 A24 family peptidase Machinery gene
  NPS16_RS02565 (NPS16_02565) dpr 526691..527218 (+) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  NPS16_RS02570 (NPS16_02570) - 527425..527631 (+) 207 WP_002262060.1 YqgQ family protein -
  NPS16_RS02575 (NPS16_02575) - 527624..528595 (+) 972 WP_002262061.1 ROK family glucokinase -
  NPS16_RS02580 (NPS16_02580) - 528605..528994 (+) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  NPS16_RS02585 (NPS16_02585) typA 529227..531071 (+) 1845 WP_002274956.1 translational GTPase TypA -
  NPS16_RS02590 (NPS16_02590) - 531100..531354 (+) 255 WP_002262064.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24859.10 Da        Isoelectric Point: 8.4751

>NTDB_id=613829 NPS16_RS02560 WP_168750868.1 525934..526590(-) (cclA/cilC) [Streptococcus mutans strain COCC33-14]
MKLILFFMLGASFGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILCSLLFQKYKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=613829 NPS16_RS02560 WP_168750868.1 525934..526590(-) (cclA/cilC) [Streptococcus mutans strain COCC33-14]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTTTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTGATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTGCAGCCTGCTTTTTCAAAAGTACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.791

98.624

0.422
  cclA/cilC Streptococcus pneumoniae Rx1

42.254

97.706

0.413
  cclA/cilC Streptococcus pneumoniae D39

42.254

97.706

0.413
  cclA/cilC Streptococcus pneumoniae R6

42.254

97.706

0.413
  cclA/cilC Streptococcus mitis NCTC 12261

41.86

98.624

0.413
  cclA/cilC Streptococcus pneumoniae TIGR4

41.315

97.706

0.404