Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LB315_RS08250 Genome accession   NZ_CP084892
Coordinates   1674571..1675017 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669571..1680017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS08220 (LB315_08230) gcvPA 1670497..1671843 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LB315_RS08225 (LB315_08235) gcvT 1671863..1672954 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LB315_RS08230 (LB315_08240) - 1673113..1673637 (-) 525 WP_001015120.1 shikimate kinase -
  LB315_RS08235 (LB315_08245) - 1673627..1673773 (-) 147 WP_001789879.1 hypothetical protein -
  LB315_RS08240 (LB315_08250) comGF 1673870..1674367 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  LB315_RS08245 (LB315_08255) comGE 1674285..1674584 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LB315_RS08250 (LB315_08260) comGD 1674571..1675017 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LB315_RS08255 (LB315_08265) comGC 1674995..1675306 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LB315_RS08260 (LB315_08270) comGB 1675320..1676390 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  LB315_RS08265 (LB315_08275) comGA 1676362..1677336 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LB315_RS08270 (LB315_08280) - 1677388..1678011 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LB315_RS08275 (LB315_08285) - 1678008..1678337 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LB315_RS08280 (LB315_08290) - 1678337..1679323 (-) 987 WP_000161315.1 ROK family glucokinase -
  LB315_RS08285 (LB315_08295) - 1679320..1679523 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=613819 LB315_RS08250 WP_001796473.1 1674571..1675017(-) (comGD) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=613819 LB315_RS08250 WP_001796473.1 1674571..1675017(-) (comGD) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993