Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NPS16_RS02290 Genome accession   NZ_CP101986
Coordinates   470737..473121 (+) Length   794 a.a.
NCBI ID   WP_082999680.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465737..478121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS02270 (NPS16_02270) luxS 467038..467520 (-) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator
  NPS16_RS02275 (NPS16_02275) - 467665..469272 (+) 1608 WP_002263046.1 ribonuclease Y -
  NPS16_RS02280 (NPS16_02280) gmk 469722..470354 (+) 633 WP_002263045.1 guanylate kinase -
  NPS16_RS02285 (NPS16_02285) rpoZ 470378..470695 (+) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  NPS16_RS02290 (NPS16_02290) priA 470737..473121 (+) 2385 WP_082999680.1 primosomal protein N' Machinery gene
  NPS16_RS02295 (NPS16_02295) fmt 473181..474116 (+) 936 WP_193754105.1 methionyl-tRNA formyltransferase -
  NPS16_RS02300 (NPS16_02300) rsmB 474097..475419 (+) 1323 WP_193754104.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NPS16_RS02305 (NPS16_02305) - 475458..476201 (+) 744 WP_002263040.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  NPS16_RS02310 (NPS16_02310) pknB 476198..478048 (+) 1851 WP_002263039.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 90455.52 Da        Isoelectric Point: 9.5762

>NTDB_id=613822 NPS16_RS02290 WP_082999680.1 470737..473121(+) (priA) [Streptococcus mutans strain COCC33-14]
MTKIAKVIVDVPLMQTDKPFSYKIPEALLSVITAGSRVHVPFGKGNRLLQGFVVSVDSGSAQHLKTIIDVLDVEPVLNQE
QLELADQMRKTVFSYKISILKSMIPNLLNSNYDRLLKPKKGLSQEEKDLIFAGKKQINFSQLNQEIQTKSLSLIQAGKID
IEYLAKDRKTIKTQKCYDVNLEKLSHLLINKRAKKRQELKDYLANHPQSGPLSDLYRLFSREVVHYFIKEAVLNISQVEV
NRTQSYFENIIQSDFLDLNPEQQTAVEQITAAIGSSNKPYLLEGITGSGKTEVYLHVIDQTLKLGKTAIVLVPEISLTPQ
MTSRFISRFGSQVAIMHSGLSDGEKFDEWRKMISNQAKVVVGARSAIFSPLKNIGAIIIDEEHEATYKQESSPRYHAREV
ALLRAQYHQAVLVLGSATPSIESRARASRGVYNFLQLSQRANPQAHIPKVEIVDFRDYIGQQKVSNLTPVLLDKIKDRLI
KKEQVVLMLNRRGYSSFIMCRDCGYVDNCPNCDISLTLHMDTKTMNCHYCGFLKGIPYVCPNCQSRQIRYYGTGTQKAYD
ELKQVLPEARILRMDVDTTKRKGAHEKILTKFGRHEADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSSERTFQ
LLTQVAGRAGRANKPGEVLIQTYNPNHYAIQLAREQDYEAFYRYEMRIRKALSYPPYYFTVGLTLSHKDEQEVIKKSYEI
VTLIKEGLTDKIKILGPTPKPVARTHNLYHYQIIIKYRFEDQLEIVLNHILDLTQAKENKKLRLIIDHEPQSFM

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=613822 NPS16_RS02290 WP_082999680.1 470737..473121(+) (priA) [Streptococcus mutans strain COCC33-14]
ATGACAAAAATTGCAAAGGTCATTGTAGATGTGCCCTTAATGCAAACAGATAAACCCTTTTCTTATAAAATTCCAGAGGC
ATTGTTATCAGTGATTACAGCAGGTTCACGTGTTCATGTTCCTTTTGGTAAAGGAAATCGATTATTACAAGGATTTGTAG
TAAGTGTAGATAGTGGATCAGCTCAGCATTTAAAAACAATTATTGACGTTTTAGATGTGGAACCGGTGCTTAATCAGGAG
CAGTTGGAATTAGCAGATCAAATGCGTAAAACGGTTTTTTCTTATAAGATTTCTATTTTGAAATCAATGATTCCAAATCT
CTTGAATTCTAATTATGATCGTTTGCTGAAACCTAAAAAAGGGCTATCTCAGGAAGAAAAGGACTTAATTTTTGCTGGTA
AAAAACAGATAAATTTTTCACAACTGAATCAAGAAATACAGACTAAAAGTTTAAGCTTGATACAGGCTGGTAAAATTGAT
ATAGAATATTTAGCCAAGGATAGAAAGACAATTAAAACGCAAAAATGTTATGATGTTAATCTTGAAAAGTTATCTCATCT
TCTTATCAATAAGCGAGCTAAAAAGCGACAAGAACTGAAAGATTATCTTGCTAATCATCCGCAGTCCGGTCCTCTTTCGG
ATCTGTATCGGCTTTTTTCAAGAGAGGTTGTTCATTATTTTATAAAAGAAGCTGTTCTCAATATTTCACAAGTAGAAGTG
AATCGTACCCAAAGCTATTTTGAAAATATTATTCAATCTGATTTTCTTGATTTAAACCCAGAACAGCAAACAGCAGTAGA
GCAAATAACAGCTGCTATTGGTTCTTCTAATAAGCCTTATCTGCTTGAAGGAATTACAGGAAGCGGAAAAACAGAGGTTT
ATCTCCATGTTATTGATCAGACTTTGAAATTAGGTAAAACAGCCATTGTTCTAGTTCCTGAGATTTCGTTAACCCCTCAG
ATGACTAGTCGCTTTATTTCTCGCTTTGGCAGTCAAGTTGCTATCATGCATTCGGGCTTGTCTGATGGTGAAAAATTCGA
TGAGTGGCGTAAAATGATATCCAATCAAGCTAAAGTTGTTGTTGGAGCGCGCTCAGCTATTTTCTCTCCTTTAAAAAATA
TTGGTGCTATCATTATTGATGAAGAGCACGAGGCAACTTATAAACAAGAGTCTAGTCCACGCTATCATGCGCGGGAGGTG
GCACTATTGCGTGCTCAATATCATCAGGCAGTTTTAGTCTTAGGCAGTGCGACGCCATCTATTGAGAGCCGAGCGCGAGC
CAGCCGTGGTGTTTATAACTTCCTGCAGCTAAGTCAAAGGGCTAATCCTCAAGCACACATTCCCAAGGTAGAAATTGTAG
ATTTTCGTGATTATATCGGTCAGCAAAAAGTGAGTAATTTAACACCTGTTCTGCTAGATAAAATTAAAGATCGTCTAATA
AAAAAGGAACAGGTCGTTCTTATGCTTAATCGTCGCGGGTATTCTAGTTTTATTATGTGCCGTGACTGCGGTTATGTTGA
TAACTGTCCTAATTGTGATATCTCCTTAACTTTACACATGGATACCAAAACAATGAATTGTCACTATTGTGGCTTTTTAA
AAGGAATTCCTTACGTCTGTCCTAATTGTCAAAGTCGGCAAATTCGTTATTATGGAACGGGAACGCAAAAAGCTTATGAT
GAATTAAAACAAGTTTTGCCAGAAGCACGCATTTTACGGATGGATGTTGATACAACCAAAAGAAAGGGAGCGCATGAGAA
GATTCTGACGAAATTTGGTCGTCATGAAGCTGACATTCTTTTAGGAACGCAAATGATTGCCAAAGGACTTGATTTTCCTA
ATGTTACTTTGGTTGGTGTATTAAATGCAGATACTTCACTTAATTTGCCGGATTTTCGCTCAAGTGAGCGTACTTTTCAA
CTTTTAACACAGGTGGCAGGACGCGCAGGCCGTGCAAATAAACCGGGTGAGGTTTTGATTCAAACCTATAATCCTAATCA
TTATGCTATTCAGTTGGCAAGGGAACAGGACTATGAAGCTTTTTATCGCTACGAAATGAGAATTCGTAAGGCACTTTCCT
ACCCACCCTACTATTTCACAGTTGGCTTAACTCTATCACATAAAGATGAGCAAGAGGTTATCAAAAAATCTTATGAGATA
GTGACATTGATCAAGGAAGGACTGACAGATAAGATTAAAATATTGGGTCCAACACCCAAACCTGTTGCTAGGACGCATAA
TCTTTATCATTATCAAATTATCATTAAGTATCGTTTTGAAGACCAGTTGGAGATTGTTTTAAATCATATTTTAGATTTAA
CTCAAGCTAAGGAAAATAAAAAGTTACGTTTGATTATTGATCATGAGCCACAAAGTTTTATGTAA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(696-790)

Type III restriction enzyme, res subunit (ResIII)

(257-420)

Helicase conserved C-terminal domain (Helicase_C)

(568-653)

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(509-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

46.848

100

0.477