Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LB315_RS08260 Genome accession   NZ_CP084892
Coordinates   1675320..1676390 (-) Length   356 a.a.
NCBI ID   WP_000776418.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670320..1681390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS08220 (LB315_08230) gcvPA 1670497..1671843 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LB315_RS08225 (LB315_08235) gcvT 1671863..1672954 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LB315_RS08230 (LB315_08240) - 1673113..1673637 (-) 525 WP_001015120.1 shikimate kinase -
  LB315_RS08235 (LB315_08245) - 1673627..1673773 (-) 147 WP_001789879.1 hypothetical protein -
  LB315_RS08240 (LB315_08250) comGF 1673870..1674367 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  LB315_RS08245 (LB315_08255) comGE 1674285..1674584 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LB315_RS08250 (LB315_08260) comGD 1674571..1675017 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LB315_RS08255 (LB315_08265) comGC 1674995..1675306 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LB315_RS08260 (LB315_08270) comGB 1675320..1676390 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  LB315_RS08265 (LB315_08275) comGA 1676362..1677336 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LB315_RS08270 (LB315_08280) - 1677388..1678011 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LB315_RS08275 (LB315_08285) - 1678008..1678337 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LB315_RS08280 (LB315_08290) - 1678337..1679323 (-) 987 WP_000161315.1 ROK family glucokinase -
  LB315_RS08285 (LB315_08295) - 1679320..1679523 (-) 204 WP_000087561.1 YqgQ family protein -
  LB315_RS08290 (LB315_08300) - 1679504..1680967 (-) 1464 WP_229373752.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41461.91 Da        Isoelectric Point: 10.1030

>NTDB_id=613821 LB315_RS08260 WP_000776418.1 1675320..1676390(-) (comGB) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=613821 LB315_RS08260 WP_000776418.1 1675320..1676390(-) (comGB) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATAATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATCCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTTATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAGTTAATTTACAACAAATTGAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997