Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NPS17_RS09730 Genome accession   NZ_CP101985
Coordinates   2041681..2042274 (-) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036681..2047274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS09700 (NPS17_09700) - 2036943..2037142 (-) 200 Protein_1865 hypothetical protein -
  NPS17_RS09705 (NPS17_09705) - 2037283..2037708 (-) 426 WP_002266116.1 hypothetical protein -
  NPS17_RS09710 (NPS17_09710) spx 2037960..2038358 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  NPS17_RS09715 (NPS17_09715) recA 2038443..2039594 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  NPS17_RS09720 (NPS17_09720) cinA 2039634..2040890 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  NPS17_RS09725 (NPS17_09725) - 2041039..2041599 (-) 561 WP_258969005.1 DNA-3-methyladenine glycosylase I -
  NPS17_RS09730 (NPS17_09730) ruvA 2041681..2042274 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  NPS17_RS09735 (NPS17_09735) hexB 2042458..2044413 (-) 1956 WP_258969006.1 DNA mismatch repair endonuclease MutL Machinery gene
  NPS17_RS09740 (NPS17_09740) - 2044638..2044916 (+) 279 Protein_1873 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=613797 NPS17_RS09730 WP_002266975.1 2041681..2042274(-) (ruvA) [Streptococcus mutans strain COCC33-14R]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=613797 NPS17_RS09730 WP_002266975.1 2041681..2042274(-) (ruvA) [Streptococcus mutans strain COCC33-14R]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411