Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   LCZ91_RS03750 Genome accession   NZ_CP084891
Coordinates   838194..838313 (+) Length   39 a.a.
NCBI ID   WP_033482837.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GZ09     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833194..843313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCZ91_RS03725 (LCZ91_03725) pilC 833777..835036 (-) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene
  LCZ91_RS03730 (LCZ91_03730) comP 835381..835809 (+) 429 WP_005921364.1 pilin Machinery gene
  LCZ91_RS03740 (LCZ91_03740) pilA2 835906..836319 (+) 414 WP_005921365.1 pilin Machinery gene
  LCZ91_RS03745 (LCZ91_03745) pilB 836361..838097 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LCZ91_RS03750 (LCZ91_03750) pilB 838194..838313 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  LCZ91_RS03755 (LCZ91_03755) - 838445..838600 (+) 156 WP_003488595.1 hypothetical protein -
  LCZ91_RS03760 (LCZ91_03760) pilR 838798..840192 (-) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  LCZ91_RS03765 (LCZ91_03765) - 840521..842134 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4205.86 Da        Isoelectric Point: 9.0113

>NTDB_id=613788 LCZ91_RS03750 WP_033482837.1 838194..838313(+) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GZ09]
MQIAEAAQAIGIRDLRQSALMKAAHGVTNLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=613788 LCZ91_RS03750 WP_033482837.1 838194..838313(+) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GZ09]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAACCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487
  pilB Acinetobacter baumannii D1279779

46.154

100

0.462
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385