Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LCZ91_RS03760 Genome accession   NZ_CP084891
Coordinates   838798..840192 (-) Length   464 a.a.
NCBI ID   WP_003488597.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GZ09     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 833798..845192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCZ91_RS03730 (LCZ91_03730) comP 835381..835809 (+) 429 WP_005921364.1 pilin Machinery gene
  LCZ91_RS03740 (LCZ91_03740) pilA2 835906..836319 (+) 414 WP_005921365.1 pilin Machinery gene
  LCZ91_RS03745 (LCZ91_03745) pilB 836361..838097 (+) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LCZ91_RS03750 (LCZ91_03750) pilB 838194..838313 (+) 120 WP_033482837.1 hypothetical protein Machinery gene
  LCZ91_RS03755 (LCZ91_03755) - 838445..838600 (+) 156 WP_003488595.1 hypothetical protein -
  LCZ91_RS03760 (LCZ91_03760) pilR 838798..840192 (-) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  LCZ91_RS03765 (LCZ91_03765) - 840521..842134 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  LCZ91_RS03770 (LCZ91_03770) sucC 842366..843535 (+) 1170 WP_003488601.1 ADP-forming succinate--CoA ligase subunit beta -
  LCZ91_RS03775 (LCZ91_03775) sucD 843560..844435 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  LCZ91_RS03780 (LCZ91_03780) - 844579..844832 (+) 254 Protein_740 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50147.60 Da        Isoelectric Point: 6.5718

>NTDB_id=613789 LCZ91_RS03760 WP_003488597.1 838798..840192(-) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GZ09]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=613789 LCZ91_RS03760 WP_003488597.1 838798..840192(-) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GZ09]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCGGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCTTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAATCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491