Detailed information NTG0061378

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N175_RS12365
• Genome accession: NC_022223
• Coordinates: 2728427..2729308 (+)
• Length: 293 a.a.
• NCBI ID: WP_013857687.1
• Uniprot ID: A0AAW4AAE0
• Organism: Vibrio anguillarum M3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2723427..2734308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N175_RS12345 (N175_12765)	nadC	2723850..2724737 (+)	888	WP_020977808.1	carboxylating nicotinate-nucleotide diphosphorylase	-
N175_RS12350 (N175_12770)	pilA	2724996..2725421 (+)	426	WP_040122945.1	pilin	Machinery gene
N175_RS12355 (N175_12775)	pilB	2725431..2727119 (+)	1689	WP_029189846.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N175_RS12360 (N175_12785)	pilC	2727162..2728388 (+)	1227	WP_013857686.1	type II secretion system F family protein	Machinery gene
N175_RS12365 (N175_12790)	pilD	2728427..2729308 (+)	882	WP_013857687.1	prepilin peptidase	Machinery gene
N175_RS12370 (N175_12795)	coaE	2729299..2729907 (+)	609	WP_013857688.1	dephospho-CoA kinase	-
N175_RS12375 (N175_12800)	zapD	2729940..2730680 (+)	741	WP_013857689.1	cell division protein ZapD	-
N175_RS12380 (N175_12805)	yacG	2730770..2730967 (+)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
N175_RS12385 (N175_12810)	rplS	2731048..2731401 (-)	354	WP_010319525.1	50S ribosomal protein L19	-
N175_RS12390 (N175_12815)	trmD	2731443..2732189 (-)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
N175_RS12395 (N175_12820)	rimM	2732217..2732771 (-)	555	WP_013857691.1	ribosome maturation factor RimM	-
N175_RS12400 (N175_12825)	rpsP	2732801..2733049 (-)	249	WP_010319522.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32890.17 Da
• Isoelectric Point: 7.2157

>NTDB_id=61378 N175_RS12365 WP_013857687.1 2728427..2729308(+) (pilD) [Vibrio anguillarum M3]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=61378 N175_RS12365 WP_013857687.1 2728427..2729308(+) (pilD) [Vibrio anguillarum M3]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.083	98.294	0.758
pilD	Vibrio campbellii strain DS40M4	76.471	98.635	0.754
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461