Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NPS17_RS04880 Genome accession   NZ_CP101985
Coordinates   1083622..1084302 (-) Length   226 a.a.
NCBI ID   WP_002262284.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078622..1089302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS04850 (NPS17_04850) - 1078845..1079411 (+) 567 WP_002266008.1 CYTH domain-containing protein -
  NPS17_RS04855 (NPS17_04855) - 1079514..1080494 (+) 981 WP_168747794.1 ribose-phosphate diphosphokinase -
  NPS17_RS04860 (NPS17_04860) - 1080498..1081616 (+) 1119 WP_002262288.1 cysteine desulfurase family protein -
  NPS17_RS04865 (NPS17_04865) - 1081618..1081965 (+) 348 WP_002262287.1 DUF1831 domain-containing protein -
  NPS17_RS04870 (NPS17_04870) - 1082265..1082906 (+) 642 WP_002262286.1 redox-sensing transcriptional repressor Rex -
  NPS17_RS04875 (NPS17_04875) - 1082930..1083625 (+) 696 WP_002266741.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  NPS17_RS04880 (NPS17_04880) radC 1083622..1084302 (-) 681 WP_002262284.1 DNA repair protein RadC Machinery gene
  NPS17_RS04885 (NPS17_04885) - 1084399..1085136 (-) 738 WP_002309536.1 DUF3307 domain-containing protein -
  NPS17_RS04890 (NPS17_04890) - 1085133..1085801 (-) 669 WP_002264255.1 SatD family protein -
  NPS17_RS10090 - 1085898..1086122 (-) 225 WP_002269248.1 hypothetical protein -
  NPS17_RS04900 (NPS17_04900) ffh 1086445..1087995 (-) 1551 WP_002271451.1 signal recognition particle protein -
  NPS17_RS04905 (NPS17_04905) - 1088108..1088440 (-) 333 WP_002271452.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25949.01 Da        Isoelectric Point: 7.4741

>NTDB_id=613737 NPS17_RS04880 WP_002262284.1 1083622..1084302(-) (radC) [Streptococcus mutans strain COCC33-14R]
MYSIHSAKEALLPRERLMTYGPESLSNQELLAILLRTGTKKEHVLNLSIKILNGLDSLADFRSLSLEELQEIEGIGQVRS
VEIKAMLELSKRINQAEYNFKERILSSERLAKIMMSELGDKRQEHLIAIYLDTQNRVIKKQVIFIGSVRRSVAEPREILH
YACKSMATSLIIVHNHPSGSTYPSENDLRFTEKIKRSCDDLGIVFLDHIIVGKKEYYSFREETDLV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=613737 NPS17_RS04880 WP_002262284.1 1083622..1084302(-) (radC) [Streptococcus mutans strain COCC33-14R]
ATGTATTCAATTCATTCTGCAAAAGAAGCACTATTGCCTAGAGAACGTCTCATGACTTATGGTCCTGAAAGTTTGAGTAA
TCAAGAATTATTGGCTATATTATTGCGAACTGGTACTAAAAAGGAACATGTTCTCAATCTCTCAATAAAAATTTTAAATG
GTCTAGATAGCTTGGCCGATTTTCGCAGCTTATCCTTAGAAGAACTGCAGGAAATTGAGGGAATCGGTCAAGTACGATCA
GTAGAAATTAAAGCTATGTTGGAATTGTCCAAAAGAATCAATCAAGCTGAATACAATTTTAAAGAACGTATTTTAAGCAG
CGAACGTTTAGCTAAAATAATGATGAGTGAATTAGGCGATAAGAGACAGGAACACCTTATTGCTATATATCTTGACACTC
AAAATCGTGTGATAAAAAAACAAGTCATTTTTATTGGCAGCGTCAGACGATCTGTTGCTGAACCCCGAGAAATCCTTCAT
TATGCTTGTAAAAGTATGGCAACATCACTTATTATTGTCCATAATCATCCTTCAGGTTCAACTTATCCAAGCGAGAATGA
CCTGCGATTTACAGAAAAAATAAAACGATCCTGTGATGATTTAGGAATCGTCTTTTTAGATCATATTATTGTCGGGAAAA
AAGAATATTACAGTTTTCGTGAGGAAACAGATCTTGTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(5-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

60.793

100

0.611
  radC Streptococcus pneumoniae TIGR4

58.407

100

0.584
  radC Streptococcus pneumoniae R6

57.965

100

0.58
  radC Streptococcus pneumoniae D39

57.965

100

0.58
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.81

92.92

0.407