Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NPS17_RS03015 Genome accession   NZ_CP101985
Coordinates   623591..624529 (+) Length   312 a.a.
NCBI ID   WP_002272062.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 618591..629529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS02985 (NPS17_02985) - 618700..619200 (+) 501 WP_019318155.1 GNAT family N-acetyltransferase -
  NPS17_RS02990 (NPS17_02990) - 619290..620663 (-) 1374 WP_002271021.1 PLP-dependent aminotransferase family protein -
  NPS17_RS02995 (NPS17_02995) - 620791..621759 (+) 969 WP_258969079.1 alcohol dehydrogenase catalytic domain-containing protein -
  NPS17_RS03000 (NPS17_03000) - 621792..621919 (-) 128 Protein_557 ArsR/SmtB family transcription factor -
  NPS17_RS03005 (NPS17_03005) - 622004..622285 (+) 282 Protein_558 hypothetical protein -
  NPS17_RS03010 (NPS17_03010) - 622391..623284 (+) 894 WP_002267117.1 alpha/beta hydrolase -
  NPS17_RS03015 (NPS17_03015) coiA 623591..624529 (+) 939 WP_002272062.1 competence protein CoiA Machinery gene
  NPS17_RS03020 (NPS17_03020) pepF 624551..626350 (+) 1800 WP_002272061.1 oligoendopeptidase F Regulator
  NPS17_RS03025 (NPS17_03025) - 626567..627184 (+) 618 WP_002261895.1 HAD-IA family hydrolase -
  NPS17_RS03030 (NPS17_03030) - 627234..627941 (+) 708 WP_002275166.1 O-methyltransferase -
  NPS17_RS03035 (NPS17_03035) prsA 628003..629004 (+) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36679.06 Da        Isoelectric Point: 9.0612

>NTDB_id=613719 NPS17_RS03015 WP_002272062.1 623591..624529(+) (coiA) [Streptococcus mutans strain COCC33-14R]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKKVQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=613719 NPS17_RS03015 WP_002272062.1 623591..624529(+) (coiA) [Streptococcus mutans strain COCC33-14R]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAAAAGTTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41