Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM20_RS16600 Genome accession   NZ_CP084876
Coordinates   3412807..3413403 (-) Length   198 a.a.
NCBI ID   WP_044521939.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain 01A030T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3407807..3418403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM20_RS16585 (LGM20_16585) helD 3408018..3410072 (-) 2055 WP_044521945.1 DNA helicase IV -
  LGM20_RS16590 (LGM20_16590) - 3410197..3410643 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM20_RS16595 (LGM20_16595) yccS 3410661..3412796 (+) 2136 WP_044521942.1 YccS family putative transporter -
  LGM20_RS16600 (LGM20_16600) sxy/tfoX 3412807..3413403 (-) 597 WP_044521939.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM20_RS16605 (LGM20_16605) - 3413421..3413726 (-) 306 WP_158239089.1 hypothetical protein -
  LGM20_RS16610 (LGM20_16610) sulA 3413752..3414261 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  LGM20_RS16615 (LGM20_16615) ompA 3414614..3415684 (+) 1071 WP_044521956.1 porin OmpA -
  LGM20_RS16620 (LGM20_16620) matP 3415831..3416283 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM20_RS16625 (LGM20_16625) - 3416469..3418226 (+) 1758 WP_044521938.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22742.41 Da        Isoelectric Point: 10.0723

>NTDB_id=613709 LGM20_RS16600 WP_044521939.1 3412807..3413403(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 01A030T]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEENIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613709 LGM20_RS16600 WP_044521939.1 3412807..3413403(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 01A030T]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCTCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGAGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCTCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.239

99.495

0.49