Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NPS17_RS02380 Genome accession   NZ_CP101985
Coordinates   492255..492920 (+) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487255..497920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS02360 (NPS17_02360) - 487813..488904 (+) 1092 WP_032526185.1 glycerol dehydrogenase -
  NPS17_RS02365 (NPS17_02365) cysK 489238..490164 (-) 927 WP_002263028.1 cysteine synthase A -
  NPS17_RS02370 (NPS17_02370) - 490255..490884 (-) 630 WP_082999677.1 YigZ family protein -
  NPS17_RS02375 (NPS17_02375) comFA/cflA 490957..492258 (+) 1302 WP_258969063.1 DEAD/DEAH box helicase Machinery gene
  NPS17_RS02380 (NPS17_02380) comFC/cflB 492255..492920 (+) 666 WP_002270131.1 ComF family protein Machinery gene
  NPS17_RS02385 (NPS17_02385) hpf 492999..493547 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NPS17_RS02390 (NPS17_02390) - 493671..494765 (+) 1095 WP_258969064.1 hypothetical protein -
  NPS17_RS02395 (NPS17_02395) - 494785..496485 (+) 1701 WP_258969065.1 zinc ribbon domain-containing protein -
  NPS17_RS02400 (NPS17_02400) - 496565..497200 (-) 636 WP_024785299.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=613709 NPS17_RS02380 WP_002270131.1 492255..492920(+) (comFC/cflB) [Streptococcus mutans strain COCC33-14R]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=613709 NPS17_RS02380 WP_002270131.1 492255..492920(+) (comFC/cflB) [Streptococcus mutans strain COCC33-14R]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439