Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NPS18_RS09725 Genome accession   NZ_CP101984
Coordinates   1959851..1960444 (-) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain UA-159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1954851..1965444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS09695 (NPS18_09695) - 1955115..1955327 (-) 213 WP_002262389.1 hypothetical protein -
  NPS18_RS09700 (NPS18_09700) - 1955454..1955879 (-) 426 WP_002262390.1 hypothetical protein -
  NPS18_RS09705 (NPS18_09705) spx 1956130..1956528 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  NPS18_RS09710 (NPS18_09710) recA 1956613..1957764 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  NPS18_RS09715 (NPS18_09715) cinA 1957804..1959060 (-) 1257 WP_002262393.1 competence/damage-inducible protein A Machinery gene
  NPS18_RS09720 (NPS18_09720) - 1959209..1959769 (-) 561 WP_002262394.1 DNA-3-methyladenine glycosylase I -
  NPS18_RS09725 (NPS18_09725) ruvA 1959851..1960444 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  NPS18_RS09730 (NPS18_09730) hexB 1960627..1962582 (-) 1956 WP_002262396.1 DNA mismatch repair endonuclease MutL Machinery gene
  NPS18_RS09735 (NPS18_09735) - 1962807..1963085 (+) 279 Protein_1867 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=613681 NPS18_RS09725 WP_002262395.1 1959851..1960444(-) (ruvA) [Streptococcus mutans strain UA-159]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=613681 NPS18_RS09725 WP_002262395.1 1959851..1960444(-) (ruvA) [Streptococcus mutans strain UA-159]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACCGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411