Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NP432_RS14025 Genome accession   NZ_CP101931
Coordinates   2716089..2716784 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC b98af     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2711089..2721784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS14000 (NP432_14000) minD 2712025..2712831 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  NP432_RS14005 (NP432_14005) minC 2712833..2713513 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  NP432_RS14010 (NP432_14010) mreD 2713566..2714084 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  NP432_RS14015 (NP432_14015) mreC 2714081..2714953 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  NP432_RS14020 (NP432_14020) mreB 2714984..2715997 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NP432_RS14025 (NP432_14025) ysxA/radC 2716089..2716784 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  NP432_RS14030 (NP432_14030) maf 2716821..2717390 (-) 570 WP_033882939.1 Maf family nucleotide pyrophosphatase -
  NP432_RS14035 (NP432_14035) spoIIB 2717543..2718541 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  NP432_RS14040 (NP432_14040) comC 2718675..2719421 (-) 747 WP_212058953.1 A24 family peptidase Machinery gene
  NP432_RS14045 (NP432_14045) folC 2719563..2720855 (-) 1293 WP_256682918.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=613071 NP432_RS14025 WP_014480455.1 2716089..2716784(-) (ysxA/radC) [Bacillus subtilis strain BGSC b98af]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=613071 NP432_RS14025 WP_014480455.1 2716089..2716784(-) (ysxA/radC) [Bacillus subtilis strain BGSC b98af]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTATTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424