Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LG401_RS11035 Genome accession   NZ_CP084711
Coordinates   2187417..2187710 (-) Length   97 a.a.
NCBI ID   WP_106072454.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2182417..2192710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS10985 (LG401_10985) sinR 2182581..2182916 (+) 336 WP_095285385.1 transcriptional regulator SinR Regulator
  LG401_RS10990 (LG401_10990) tasA 2182984..2183784 (-) 801 WP_034661283.1 biofilm matrix protein TasA -
  LG401_RS10995 (LG401_10995) sipW 2183842..2184414 (-) 573 WP_066031752.1 signal peptidase I SipW -
  LG401_RS11000 (LG401_11000) tapA 2184466..2184993 (-) 528 WP_060596834.1 amyloid fiber anchoring/assembly protein TapA -
  LG401_RS11005 (LG401_11005) - 2185293..2185571 (+) 279 WP_223250494.1 DUF3889 domain-containing protein -
  LG401_RS11010 (LG401_11010) - 2185605..2185799 (-) 195 WP_041086171.1 YqzE family protein -
  LG401_RS11015 (LG401_11015) - 2185858..2186241 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  LG401_RS11020 (LG401_11020) comGF 2186238..2186738 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  LG401_RS11025 (LG401_11025) comGE 2186677..2186994 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  LG401_RS11030 (LG401_11030) comGD 2186978..2187424 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  LG401_RS11035 (LG401_11035) comGC 2187417..2187710 (-) 294 WP_106072454.1 competence type IV pilus major pilin ComGC Machinery gene
  LG401_RS11040 (LG401_11040) comGB 2187727..2188767 (-) 1041 WP_066030664.1 competence type IV pilus assembly protein ComGB -
  LG401_RS11045 (LG401_11045) comGA 2188748..2189818 (-) 1071 WP_060596836.1 competence type IV pilus ATPase ComGA Machinery gene
  LG401_RS11050 (LG401_11050) - 2189996..2190868 (-) 873 WP_034661297.1 STAS domain-containing protein -
  LG401_RS11060 (LG401_11060) - 2191092..2191472 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LG401_RS11065 (LG401_11065) - 2191686..2191928 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  LG401_RS11070 (LG401_11070) - 2191977..2192615 (-) 639 WP_060596838.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 6.9665

>NTDB_id=612630 LG401_RS11035 WP_106072454.1 2187417..2187710(-) (comGC) [Bacillus pumilus strain AR03]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKNGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=612630 LG401_RS11035 WP_106072454.1 2187417..2187710(-) (comGC) [Bacillus pumilus strain AR03]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATTGTCATGCTCGTGATTTCGATTCTTTTACTTATTACCATCCC
GAATATCACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCATGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAATGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392