Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LG401_RS10985 Genome accession   NZ_CP084711
Coordinates   2182581..2182916 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2177581..2187916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS10965 (LG401_10965) gcvT 2178059..2179156 (-) 1098 WP_216454810.1 glycine cleavage system aminomethyltransferase GcvT -
  LG401_RS10970 (LG401_10970) - 2179718..2181388 (+) 1671 WP_060596833.1 DEAD/DEAH box helicase -
  LG401_RS10975 (LG401_10975) - 2181403..2182200 (+) 798 WP_034661279.1 YqhG family protein -
  LG401_RS10980 (LG401_10980) - 2182383..2182547 (+) 165 WP_106031001.1 anti-repressor SinI family protein -
  LG401_RS10985 (LG401_10985) sinR 2182581..2182916 (+) 336 WP_095285385.1 transcriptional regulator SinR Regulator
  LG401_RS10990 (LG401_10990) tasA 2182984..2183784 (-) 801 WP_034661283.1 biofilm matrix protein TasA -
  LG401_RS10995 (LG401_10995) sipW 2183842..2184414 (-) 573 WP_066031752.1 signal peptidase I SipW -
  LG401_RS11000 (LG401_11000) tapA 2184466..2184993 (-) 528 WP_060596834.1 amyloid fiber anchoring/assembly protein TapA -
  LG401_RS11005 (LG401_11005) - 2185293..2185571 (+) 279 WP_223250494.1 DUF3889 domain-containing protein -
  LG401_RS11010 (LG401_11010) - 2185605..2185799 (-) 195 WP_041086171.1 YqzE family protein -
  LG401_RS11015 (LG401_11015) - 2185858..2186241 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  LG401_RS11020 (LG401_11020) comGF 2186238..2186738 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  LG401_RS11025 (LG401_11025) comGE 2186677..2186994 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  LG401_RS11030 (LG401_11030) comGD 2186978..2187424 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  LG401_RS11035 (LG401_11035) comGC 2187417..2187710 (-) 294 WP_106072454.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=612629 LG401_RS10985 WP_095285385.1 2182581..2182916(+) (sinR) [Bacillus pumilus strain AR03]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=612629 LG401_RS10985 WP_095285385.1 2182581..2182916(+) (sinR) [Bacillus pumilus strain AR03]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937