Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LDB25_RS18540 Genome accession   NZ_CP084695
Coordinates   3683216..3683905 (-) Length   229 a.a.
NCBI ID   WP_111927758.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJB5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3678216..3688905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS18505 (LDB25_18430) - 3678414..3678896 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LDB25_RS18510 (LDB25_18435) flgM 3678911..3679177 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LDB25_RS18515 (LDB25_18440) - 3679247..3679666 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  LDB25_RS18520 (LDB25_18445) comFC 3679740..3680429 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  LDB25_RS18525 (LDB25_18450) - 3680435..3680719 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  LDB25_RS18530 (LDB25_18455) comFA 3680777..3682162 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  LDB25_RS18535 (LDB25_18460) - 3682270..3683118 (-) 849 WP_003151387.1 DegV family protein -
  LDB25_RS18540 (LDB25_18465) degU 3683216..3683905 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  LDB25_RS18545 (LDB25_18470) degS 3683982..3685145 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LDB25_RS18550 (LDB25_18475) - 3685368..3686015 (+) 648 WP_007614107.1 YigZ family protein -
  LDB25_RS18555 (LDB25_18480) - 3686020..3687234 (+) 1215 WP_014419013.1 LCP family protein -
  LDB25_RS18560 (LDB25_18485) - 3687324..3688400 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25794.51 Da        Isoelectric Point: 6.1191

>NTDB_id=612496 LDB25_RS18540 WP_111927758.1 3683216..3683905(-) (degU) [Bacillus velezensis strain DJB5]
MTKVNIVIIDDHQLFRGGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=612496 LDB25_RS18540 WP_111927758.1 3683216..3683905(-) (degU) [Bacillus velezensis strain DJB5]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGGGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996