Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LGL97_RS12050 Genome accession   NZ_CP084655
Coordinates   2701533..2702075 (-) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain SR10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2696533..2707075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL97_RS12030 (LGL97_12030) - 2696738..2697196 (-) 459 WP_225583626.1 GNAT family N-acetyltransferase -
  LGL97_RS12035 (LGL97_12035) - 2697532..2698797 (+) 1266 WP_225583507.1 MFS transporter -
  LGL97_RS12040 (LGL97_12040) - 2698799..2700232 (+) 1434 WP_225583506.1 glycoside hydrolase family 32 protein -
  LGL97_RS12045 (LGL97_12045) - 2700411..2701406 (-) 996 WP_225583505.1 LacI family DNA-binding transcriptional regulator -
  LGL97_RS12050 (LGL97_12050) ssb 2701533..2702075 (-) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LGL97_RS12055 (LGL97_12055) uvrA 2702325..2705159 (+) 2835 WP_010279281.1 excinuclease ABC subunit UvrA -
  LGL97_RS12060 (LGL97_12060) - 2705174..2705593 (+) 420 WP_094432328.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=612328 LGL97_RS12050 WP_039283288.1 2701533..2702075(-) (ssb) [Pectobacterium brasiliense strain SR10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=612328 LGL97_RS12050 WP_039283288.1 2701533..2702075(-) (ssb) [Pectobacterium brasiliense strain SR10]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACTTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGTCCGGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461