Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LGL95_RS03785 Genome accession   NZ_CP084654
Coordinates   853788..854330 (-) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium versatile strain SR12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 848788..859330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL95_RS03760 (LGL95_03760) - 849447..850499 (+) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  LGL95_RS03765 (LGL95_03765) - 850499..851536 (+) 1038 WP_039490810.1 LacI family DNA-binding transcriptional regulator -
  LGL95_RS03770 (LGL95_03770) - 851544..852134 (-) 591 WP_130623464.1 hypothetical protein -
  LGL95_RS03775 (LGL95_03775) - 852319..852777 (-) 459 WP_130623463.1 GNAT family N-acetyltransferase -
  LGL95_RS03780 (LGL95_03780) - 853019..853630 (+) 612 WP_039470145.1 hypothetical protein -
  LGL95_RS03785 (LGL95_03785) ssb 853788..854330 (-) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LGL95_RS03790 (LGL95_03790) uvrA 854575..857409 (+) 2835 WP_107333433.1 excinuclease ABC subunit UvrA -
  LGL95_RS03795 (LGL95_03795) - 857425..857844 (+) 420 WP_130623462.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LGL95_RS03800 (LGL95_03800) - 858441..859298 (+) 858 WP_226306164.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=612297 LGL95_RS03785 WP_039283288.1 853788..854330(-) (ssb) [Pectobacterium versatile strain SR12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=612297 LGL95_RS03785 WP_039283288.1 853788..854330(-) (ssb) [Pectobacterium versatile strain SR12]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAATCTCAGCAGCGTCCGGCACAG
AACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461