Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LF844_RS03050 Genome accession   NZ_CP084625
Coordinates   643661..644146 (+) Length   161 a.a.
NCBI ID   WP_151131584.1    Uniprot ID   A0A5J6QIQ1
Organism   Metapseudomonas lalkuanensis strain ACYW.190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 638661..649146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF844_RS03040 (LF844_03040) uvrA 639215..642049 (-) 2835 WP_151131582.1 excinuclease ABC subunit UvrA -
  LF844_RS03045 (LF844_03045) - 642257..643651 (+) 1395 WP_151131583.1 MFS transporter -
  LF844_RS03050 (LF844_03050) ssb 643661..644146 (+) 486 WP_151131584.1 single-stranded DNA-binding protein Machinery gene
  LF844_RS03055 (LF844_03055) - 644265..646691 (-) 2427 WP_404804869.1 TonB-dependent siderophore receptor -
  LF844_RS03060 (LF844_03060) - 646930..647895 (-) 966 WP_226283402.1 FecR domain-containing protein -
  LF844_RS03065 (LF844_03065) - 647892..648392 (-) 501 WP_151131587.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17907.85 Da        Isoelectric Point: 5.3193

>NTDB_id=612047 LF844_RS03050 WP_151131584.1 643661..644146(+) (ssb) [Metapseudomonas lalkuanensis strain ACYW.190]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGSEGDAPRAPRPQREPQQSAAQQRPAPQPAAQPAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=612047 LF844_RS03050 WP_151131584.1 643661..644146(+) (ssb) [Metapseudomonas lalkuanensis strain ACYW.190]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGATCCGGAAACCCGCTATCTGCCCAACGGCAA
CGCGGTGACCAACATCACCCTGGCCACCAGCGAGTCCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGCTCGCAAGTCTACGTCGAA
GGTTCCCTGCGCACTCGCGAGTGGGAAAAGGACGGCGTGAAGCGCTACACCACCGAGATCGTGGTCGACATCAACGGCCA
GATGCAACTGCTCGGCGGCCGTCCTGGCAGCGAAGGCGACGCCCCGCGTGCTCCGCGCCCGCAGCGTGAGCCGCAGCAGT
CCGCTGCGCAGCAGCGCCCGGCTCCGCAGCCCGCCGCCCAGCCGGCTCCGGACTACGACAGCTTCGACGACGACATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QIQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.429

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.547
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.497
  ssb Neisseria meningitidis MC58

44.134

100

0.491