Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LDJ84_RS20910 Genome accession   NZ_CP084413
Coordinates   4509742..4510089 (-) Length   115 a.a.
NCBI ID   WP_024765976.1    Uniprot ID   A0A1B8TBL1
Organism   Pseudomonas sp. HS-18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4504742..4515089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDJ84_RS20895 (LDJ84_20895) uvrB 4505951..4507966 (-) 2016 WP_084357425.1 excinuclease ABC subunit UvrB -
  LDJ84_RS20900 (LDJ84_20900) - 4508151..4509347 (+) 1197 WP_024767348.1 amino acid aminotransferase -
  LDJ84_RS20910 (LDJ84_20910) comEA/comE1 4509742..4510089 (-) 348 WP_024765976.1 ComEA family DNA-binding protein Machinery gene
  LDJ84_RS20915 (LDJ84_20915) - 4510286..4512274 (-) 1989 WP_170858335.1 polysaccharide biosynthesis protein -
  LDJ84_RS20920 (LDJ84_20920) - 4512345..4513370 (-) 1026 WP_065086059.1 MraY family glycosyltransferase -
  LDJ84_RS20925 (LDJ84_20925) - 4513367..4514329 (-) 963 WP_226045369.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 11772.60 Da        Isoelectric Point: 10.2472

>NTDB_id=610993 LDJ84_RS20910 WP_024765976.1 4509742..4510089(-) (comEA/comE1) [Pseudomonas sp. HS-18]
MKKSLLSVTSLILLAGLSFGGAALAATNGAPAVKPSAETTVSAEKAPIAQVAAVNINTASAEELQHSLKGIGKVKAQAIV
DYRTTNGPFTTVDQLLEVKGIGKGTLDKNRDKISL

Nucleotide


Download         Length: 348 bp        

>NTDB_id=610993 LDJ84_RS20910 WP_024765976.1 4509742..4510089(-) (comEA/comE1) [Pseudomonas sp. HS-18]
ATGAAGAAGAGTCTGCTTTCCGTTACAAGTCTGATTCTGTTGGCGGGCCTCTCGTTCGGTGGAGCCGCTCTGGCAGCCAC
CAATGGGGCTCCGGCCGTAAAACCCTCAGCCGAAACCACAGTTTCGGCCGAGAAGGCGCCTATTGCCCAGGTGGCGGCCG
TGAATATCAACACTGCATCGGCTGAAGAGTTGCAGCATTCCCTGAAAGGCATCGGCAAGGTGAAAGCACAGGCCATCGTT
GACTACCGCACAACCAACGGTCCGTTCACCACGGTCGATCAATTGCTGGAAGTAAAGGGCATCGGCAAGGGTACGCTGGA
CAAGAATCGCGACAAGATTTCGCTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8TBL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.967

100

0.513
  comEA Vibrio cholerae C6706

61.039

66.957

0.409
  comEA Vibrio cholerae strain A1552

61.039

66.957

0.409
  comE1/comEA Haemophilus influenzae Rd KW20

56

65.217

0.365