Detailed information NTG0610987

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LDJ84_RS15970
• Genome accession: NZ_CP084413
• Coordinates: 3449888..3451117 (-)
• Length: 409 a.a.
• NCBI ID: WP_024767267.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HS-18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3444888..3456117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDJ84_RS15955 (LDJ84_15955)	-	3446192..3447010 (+)	819	WP_024767265.1	helix-turn-helix domain-containing protein	-
LDJ84_RS15960 (LDJ84_15960)	-	3447127..3448011 (-)	885	WP_024767266.1	DMT family transporter	-
LDJ84_RS15965 (LDJ84_15965)	-	3448532..3449782 (+)	1251	WP_226044988.1	OprD family porin	-
LDJ84_RS15970 (LDJ84_15970)	pilU	3449888..3451117 (-)	1230	WP_024767267.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LDJ84_RS15975 (LDJ84_15975)	-	3451304..3451582 (+)	279	WP_226044989.1	peptidylprolyl isomerase	-
LDJ84_RS15980 (LDJ84_15980)	-	3451595..3451957 (+)	363	WP_084359312.1	MmcQ/YjbR family DNA-binding protein	-
LDJ84_RS15985 (LDJ84_15985)	-	3451957..3452511 (+)	555	WP_226044990.1	putative glycolipid-binding domain-containing protein	-
LDJ84_RS15990 (LDJ84_15990)	-	3452648..3453829 (+)	1182	WP_084359307.1	MFS transporter	-
LDJ84_RS15995 (LDJ84_15995)	-	3454113..3455390 (+)	1278	WP_226044991.1	OprD family porin	-
LDJ84_RS16000 (LDJ84_16000)	-	3455463..3455744 (-)	282	WP_226044992.1	hypothetical protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 44674.02 Da
• Isoelectric Point: 6.1281

>NTDB_id=610987 LDJ84_RS15970 WP_024767267.1 3449888..3451117(-) (pilU) [Pseudomonas sp. HS-18]
MDIQAMLKILATQDGSDLYLSTGAPPCAKFNGVLKPLSNEPMKAGDVARIGYGLMDEEQRAEFDRELEMNLAISVPGVGR
FRINLFKQRNEVSIVARNIKLDIPLFDDLKLPDVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PIEYVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTQDGKRRAAVEVLLGTATISDIIKRGDFSSIKEIMDKSRALGMQTFDQAL
FDLAVEGAITEEEAVKNADSANNLRLKLKLYKDNPGSVGSTATPAAAKPAAPAPVAPPPATQPVEASSWGLELALEEIEA
EDAEKPAGQ

Nucleotide

• Length: 1230 bp

>NTDB_id=610987 LDJ84_RS15970 WP_024767267.1 3449888..3451117(-) (pilU) [Pseudomonas sp. HS-18]
ATGGATATCCAAGCGATGCTCAAGATCCTGGCCACCCAGGATGGTTCGGATCTTTACCTCTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAACGGGGTGCTCAAACCCCTGTCCAACGAGCCGATGAAGGCAGGCGATGTCGCCCGCATCGGCTATGGGC
TGATGGACGAGGAGCAGCGTGCGGAGTTCGACCGCGAGCTGGAGATGAACCTGGCGATTTCAGTTCCCGGTGTAGGGCGT
TTCCGGATCAACCTGTTCAAACAGCGCAATGAAGTGTCCATCGTGGCGCGCAACATCAAGCTGGACATTCCGCTGTTCGA
CGACTTGAAGCTGCCCGACGTGCTGCTCAAGGTGGTCATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCCACTTCCCTGGCGGCGCTGATCGACCACCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAC
CCCATCGAATACGTGCACCGGCACCGCAAGTCGATCATCAACCAGCGCGAAGTGGGCGTGGACACCCGCAGCTTCCATGC
CGCACTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATTCTGATCGGCGAGATCCGTGACCGCGAGACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCGATCTCCACGCTGCACGCGAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAGCGCCGGCCGCAGCTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTTTCCCAGCG
CCTGGTACGCACCCAGGACGGCAAGCGCCGTGCAGCAGTGGAAGTGCTGCTGGGCACGGCGACCATCAGCGACATCATCA
AGCGTGGCGACTTCAGTTCGATCAAGGAGATCATGGACAAGTCCCGTGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGCGGTGGAAGGGGCGATCACCGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCGAACAACCTGCGGCTGAA
GCTCAAGCTGTACAAGGACAACCCGGGCAGCGTCGGCAGCACTGCCACACCTGCGGCTGCCAAGCCAGCTGCCCCGGCGC
CGGTTGCACCGCCGCCGGCCACCCAGCCTGTCGAGGCTTCGAGTTGGGGGCTGGAACTGGCACTGGAAGAGATCGAGGCG
GAAGACGCCGAGAAGCCGGCCGGGCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.583	87.286	0.494
pilU	Acinetobacter baylyi ADP1	52.958	86.797	0.46
pilU	Vibrio cholerae strain A1552	49.861	88.264	0.44
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.386	95.599	0.377