Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDJ84_RS03430 Genome accession   NZ_CP084413
Coordinates   716769..717266 (+) Length   165 a.a.
NCBI ID   WP_017521888.1    Uniprot ID   A0A5R9RBY4
Organism   Pseudomonas sp. HS-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 711769..722266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDJ84_RS03420 (LDJ84_03420) uvrA 712314..715148 (-) 2835 WP_054906705.1 excinuclease ABC subunit UvrA -
  LDJ84_RS03425 (LDJ84_03425) - 715362..716750 (+) 1389 WP_024767075.1 MFS transporter -
  LDJ84_RS03430 (LDJ84_03430) ssb 716769..717266 (+) 498 WP_017521888.1 single-stranded DNA-binding protein Machinery gene
  LDJ84_RS03435 (LDJ84_03435) - 717443..717631 (+) 189 WP_024767074.1 hypothetical protein -
  LDJ84_RS03440 (LDJ84_03440) - 717763..720207 (-) 2445 WP_226045895.1 TonB-dependent siderophore receptor -
  LDJ84_RS03445 (LDJ84_03445) - 720511..721479 (-) 969 WP_226045896.1 FecR domain-containing protein -
  LDJ84_RS03450 (LDJ84_03450) - 721476..721973 (-) 498 WP_226045897.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18349.27 Da        Isoelectric Point: 5.2781

>NTDB_id=610974 LDJ84_RS03430 WP_017521888.1 716769..717266(+) (ssb) [Pseudomonas sp. HS-18]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAQRPAPQQQSQPAPQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=610974 LDJ84_RS03430 WP_017521888.1 716769..717266(+) (ssb) [Pseudomonas sp. HS-18]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTAGGTAACGTCGGTGGCGATCCGGAAACCCGTTACATGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGACAAGTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTCGGCGGCCGTCCGGGCGCCGGTGGTGACGATGCTCCGCGCGCTCCCCGCGAGCCGCAGCAGCGTC
CGCAGCAGGCCCAGCGTCCTGCGCCGCAGCAGCAGTCCCAGCCCGCGCCGCAACCGGCTCCGGACTACGACAGCTTCGAC
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9RBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.606
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.558
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.491
  ssb Neisseria meningitidis MC58

45.198

100

0.485