Detailed information NTG0610772

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LEO74_RS02145
• Genome accession: NZ_CP084352
• Coordinates: 472908..473780 (-)
• Length: 290 a.a.
• NCBI ID: WP_224481187.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain 71339
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 467908..478780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEO74_RS02120 (LEO74_02120)	-	469644..470828 (+)	1185	WP_226031323.1	tetratricopeptide repeat protein	-
LEO74_RS02125 (LEO74_02125)	mutT	470837..471250 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
LEO74_RS02130 (LEO74_02130)	yacG	471311..471505 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LEO74_RS02135 (LEO74_02135)	zapD	471515..472237 (-)	723	WP_162498668.1	cell division protein ZapD	-
LEO74_RS02140 (LEO74_02140)	coaE	472275..472889 (-)	615	WP_226031324.1	dephospho-CoA kinase	-
LEO74_RS02145 (LEO74_02145)	pilD	472908..473780 (-)	873	WP_224481187.1	A24 family peptidase	Machinery gene
LEO74_RS02150 (LEO74_02150)	pilC	473803..475044 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
LEO74_RS02155 (LEO74_02155)	pilB	475160..476866 (-)	1707	WP_146061427.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LEO74_RS02160 (LEO74_02160)	-	476873..477304 (-)	432	WP_041216993.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LEO74_RS02165 (LEO74_02165)	nadC	477627..478484 (-)	858	WP_224481186.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32424.72 Da
• Isoelectric Point: 6.7410

>NTDB_id=610772 LEO74_RS02145 WP_224481187.1 472908..473780(-) (pilD) [Aeromonas hydrophila strain 71339]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=610772 LEO74_RS02145 WP_224481187.1 472908..473780(-) (pilD) [Aeromonas hydrophila strain 71339]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGTCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
AGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTAGCGCTCACTTTCATCGACCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTTGGCCCCTATCT
GGCCATCGCCGGCTGGATTGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.944	98.621	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459