Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDO52_RS13405 Genome accession   NZ_CP084300
Coordinates   2779760..2780350 (-) Length   196 a.a.
NCBI ID   WP_005095120.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2774760..2785350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS13385 (LDO52_13385) - 2775905..2776783 (-) 879 WP_005095152.1 pirin family protein -
  LDO52_RS13390 (LDO52_13390) ycaC 2777092..2777718 (+) 627 WP_005095149.1 isochorismate family cysteine hydrolase YcaC -
  LDO52_RS13395 (LDO52_13395) - 2777862..2778785 (+) 924 WP_179999594.1 LysR substrate-binding domain-containing protein -
  LDO52_RS13400 (LDO52_13400) ahpC 2778867..2779430 (-) 564 WP_005095146.1 alkyl hydroperoxide reductase subunit C -
  LDO52_RS13405 (LDO52_13405) ssb 2779760..2780350 (-) 591 WP_005095120.1 single-stranded DNA-binding protein Machinery gene
  LDO52_RS13410 (LDO52_13410) - 2780402..2781766 (-) 1365 WP_074383891.1 MFS transporter -
  LDO52_RS13415 (LDO52_13415) - 2781920..2783008 (-) 1089 WP_004647275.1 DUF475 domain-containing protein -
  LDO52_RS13420 (LDO52_13420) tenA 2783231..2783902 (+) 672 WP_159138373.1 thiaminase II -
  LDO52_RS13425 (LDO52_13425) - 2784120..2784488 (+) 369 WP_225553295.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21392.05 Da        Isoelectric Point: 6.4810

>NTDB_id=610531 LDO52_RS13405 WP_005095120.1 2779760..2780350(-) (ssb) [Acinetobacter pseudolwoffii strain XMC5X702]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRSQGEQGDNSFNQPRFNNNNQASNNQSGGYGNNPQSGYGSAPQQGGFNN
NQGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=610531 LDO52_RS13405 WP_005095120.1 2779760..2780350(-) (ssb) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGTTC
TCTCACTCAATTTTCGATTGCTACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGCGAAATTGCGCAGCAATACCTGCGTAAAGGTTCTAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGATCAAAATGGTCAGGAGCGCTATACAACGGAAATCCGTGGTGATCAAATGCAGAT
GCTGGACTCGAATCGTTCACAAGGCGAGCAGGGCGACAACAGTTTTAACCAGCCACGTTTTAATAACAATAATCAGGCGA
GTAACAACCAAAGTGGCGGTTATGGCAATAATCCGCAGTCGGGTTATGGTTCAGCGCCGCAGCAAGGCGGTTTCAACAAC
AATCAGGGTGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCACCGAAATCTGCACCTGCACCAACAGCAGCGCCTGC
AGCTGATTTAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.792

100

0.515
  ssb Vibrio cholerae strain A1552

41.5

100

0.423
  ssb Neisseria meningitidis MC58

38.342

98.469

0.378
  ssb Neisseria gonorrhoeae MS11

38.342

98.469

0.378